LOCUS BC015000 1070 bp mRNA linear HUM 04-OCT-2003
DEFINITION Homo sapiens major histocompatibility complex, class II, DP beta 1,
mRNA (cDNA clone MGC:23556 IMAGE:4851472), complete cds.
ACCESSION BC015000
VERSION BC015000.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1070)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1070)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: b Column: 8.
FEATURES Location/Qualifiers
source 1..1070
/db_xref="H-InvDB:HIT000036953"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23556 IMAGE:4851472"
/tissue_type="Primary B-Cells from Tonsils"
/clone_lib="NIH_MGC_48"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1070
/gene="HLA-DPB1"
/gene_synonym="HLA-DP1B"
/db_xref="GeneID:3115"
/db_xref="MIM:142858"
CDS 37..810
/gene="HLA-DPB1"
/gene_synonym="HLA-DP1B"
/codon_start=1
/product="HLA-DPB1 protein"
/protein_id="AAH15000.1"
/db_xref="GeneID:3115"
/db_xref="MIM:142858"
/translation="MVLQVSAAPRTVALTALLMVLLTSVVQGRATPENYVHQLRQECY
AFNGTQRFLERYIYNREEFVRFDSDVGEFRAVTELGRPDEDYWNSQKDILEEERAVPD
RMCRHNYELDEAVTLQRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLN
GQEETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQS
DSARSKTLTGAGGFVLGLIICGVGIFMHRRSKKVQRGSA"
misc_feature 160..384
/gene="HLA-DPB1"
/gene_synonym="HLA-DP1B"
/note="MHC_II_beta; Region: Class II histocompatibility
antigen, beta domain"
/db_xref="CDD:pfam00969"
misc_feature 448..663
/gene="HLA-DPB1"
/gene_synonym="HLA-DP1B"
/note="IGc1; Region: Immunoglobulin C-Type"
/db_xref="CDD:smart00407"
BASE COUNT 260 a 277 c 297 g 236 t
ORIGIN
1 gctcttttca ttttgccatc cttttccagc tccatgatgg ttctgcaggt ttctgcggcc
61 ccccggacag tggctctgac ggcgttactg atggtgctgc tcacatctgt ggtccagggc
121 agggccactc cagagaatta cgtgcaccag ttacggcagg aatgctacgc gtttaatggg
181 acacagcgct tcctggagag atacatctac aaccgggagg agttcgtgcg cttcgacagc
241 gacgtggggg agttccgggc ggtgacggag ctggggcggc ctgatgagga ctactggaac
301 agccagaagg acatcctgga ggaggagcgg gcagtgccgg acaggatgtg cagacacaac
361 tacgagctgg acgaggccgt gaccctgcag cgccgagtcc agcctagggt gaatgtttcc
421 ccctccaaga aggggccctt gcagcaccac aacctgcttg tctgccacgt gacggatttc
481 tacccaggca gcattcaagt ccgatggttc ctgaatggac aggaggaaac agctggggtc
541 gtgtccacca acctgatccg taatggagac tggaccttcc agatcctggt gatgctggaa
601 atgacccccc agcagggaga tgtctacacc tgccaagtgg agcacaccag cctggatagt
661 cctgtcaccg tggagtggaa ggcacagtct gattctgccc ggagtaagac attgacggga
721 gctgggggct tcgtgctggg gctcatcatc tgtggagtgg gcatcttcat gcacaggagg
781 agcaagaaag ttcaacgagg atctgcataa acagggttcc tgagctcact gaaaagacta
841 ttgtgcctta ggaaaagcat ttgctgtgtt tcgttagcat ctggctccag gacagacctt
901 caacttccaa attggatact gctgccaaga agttgctctg aagtcagttt ctatcattct
961 gctctttgat tcaaagcact gtttctctca ctgggcctcc aaccatgttc ccttcttctt
1021 agcaccacaa ataatcaaaa cccaacatga aaaaaaaaaa aaaaaaaaaa
//