LOCUS BC014970 1582 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens sphingosine-1-phosphate receptor 4, mRNA (cDNA clone
MGC:23096 IMAGE:4849349), complete cds.
ACCESSION BC014970
VERSION BC014970.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1582)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1582)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Daniel McVicar, DBS/NCI
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: a Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4503458.
FEATURES Location/Qualifiers
source 1..1582
/db_xref="H-InvDB:HIT000036932"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23096 IMAGE:4849349"
/tissue_type="Blood, natural killer cell"
/clone_lib="NIH_MGC_106"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1582
/gene="S1PR4"
/gene_synonym="LPC1"
/gene_synonym="S1P4"
/gene_synonym="SLP4"
/db_xref="GeneID:8698"
/db_xref="HGNC:HGNC:3170"
/db_xref="MIM:603751"
CDS 26..1180
/gene="S1PR4"
/gene_synonym="LPC1"
/gene_synonym="S1P4"
/gene_synonym="SLP4"
/codon_start=1
/product="sphingosine-1-phosphate receptor 4"
/protein_id="AAH14970.1"
/db_xref="GeneID:8698"
/db_xref="HGNC:HGNC:3170"
/db_xref="MIM:603751"
/translation="MNATGTPVAPESCQQLAAGGHSRLIVLHYNHSGRLAGRGGPEDG
GLGALRGLSVAASCLVVLENLLVLAAITSHMRSRRWVYYCLVNITLSDLLTGAAYLAN
VLLSGARTFRLAPAQWFLREGLLFTALAASTFSLLFTAGERFATMVRPVAESGATKTS
RVYGFIGLCWLLAALLGMLPLLGWNCLCAFDRCSSLLPLYSKRYILFCLVIFAGVLAT
IMGLYGAIFRLVQASGQKAPRPAARRKARRLLKTVLMILLAFLVCWGPLFGLLLADVF
GSNLWAQEYLRGMDWILALAVLNSAVNPIIYSFRSREVCRAVLSFLCCGCLRLGMRGP
GDCLARAVEAHSGASTTDSSLRPRDSFRGSRSLSFRMREPLSSISSVRSI"
BASE COUNT 223 a 540 c 523 g 296 t
ORIGIN
1 cctcagtcag cccccggggg aggccatgaa cgccacgggg accccggtgg cccccgagtc
61 ctgccaacag ctggcggccg gcgggcacag ccggctcatt gttctgcact acaaccactc
121 gggccggctg gccgggcgcg gggggccgga ggatggcggc ctgggggccc tgcgggggct
181 gtcggtggcc gccagctgcc tggtggtgct ggagaacttg ctggtgctgg cggccatcac
241 cagccacatg cggtcgcgac gctgggtcta ctattgcctg gtgaacatca cgctgagtga
301 cctgctcacg ggcgcggcct acctggccaa cgtgctgctg tcgggggccc gcaccttccg
361 tctggcgccc gcccagtggt tcctacggga gggcctgctc ttcaccgccc tggccgcctc
421 caccttcagc ctgctcttca ctgcagggga gcgctttgcc accatggtgc ggccggtggc
481 cgagagcggg gccaccaaga ccagccgcgt ctacggcttc atcggcctct gctggctgct
541 ggccgcgctg ctggggatgc tgcctttgct gggctggaac tgcctgtgcg cctttgaccg
601 ctgctccagc cttctgcccc tctactccaa gcgctacatc ctcttctgcc tggtgatctt
661 cgccggcgtc ctggccacca tcatgggcct ctatggggcc atcttccgcc tggtgcaggc
721 cagcgggcag aaggccccac gcccagcggc ccgccgcaag gcccgccgcc tgctgaagac
781 ggtgctgatg atcctgctgg ccttcctggt gtgctggggc ccactcttcg ggctgctgct
841 ggccgacgtc tttggctcca acctctgggc ccaggagtac ctgcggggca tggactggat
901 cctggccctg gccgtcctca actcggcggt caaccccatc atctactcct tccgcagcag
961 ggaggtgtgc agagccgtgc tcagcttcct ctgctgcggg tgtctccggc tgggcatgcg
1021 agggcccggg gactgcctgg cccgggccgt cgaggctcac tccggagctt ccaccaccga
1081 cagctctctg aggccaaggg acagctttcg cggctcccgc tcgctcagct ttcggatgcg
1141 ggagcccctg tccagcatct ccagcgtgcg gagcatctga agttgcagtc ttgcgtgtgg
1201 atggtgcagc caccgggtgc gtgccaggca ggccctcctg gggtacagga agctgtgtgc
1261 acgcagcctc gcctgtatgg ggagcaggga acgggacagg cccccatggt cttcccggtg
1321 gcctctcggg gcttctgacg ccaaatgggc ttcccatggt caccctggac aaggaggcaa
1381 ccaccccacc tccccgtagg agcagagagc accctggtgt gggggcgagt gggttcccca
1441 caaccccgct tctgtgtgat tctggggaag tcccggcccc tctctgggcc tcagtagggc
1501 tcccaggctg caaggggtgg actgtgggat gcatgccctg gcaacattga agttcgatca
1561 tggtaaaaaa aaaaaaaaaa aa
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