LOCUS BC014940 2331 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens CXXC finger 1 (PHD domain), mRNA (cDNA clone MGC:18007
IMAGE:3922983), complete cds.
ACCESSION BC014940
VERSION BC014940.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2331)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2331)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC014940.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: p Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 52856410.
FEATURES Location/Qualifiers
source 1..2331
/db_xref="H-InvDB:HIT000036906"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:18007 IMAGE:3922983"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2331
/gene="CXXC1"
/gene_synonym="2410002I16Rik"
/gene_synonym="5830420C16Rik"
/gene_synonym="CGBP"
/gene_synonym="hCGBP"
/gene_synonym="HsT2645"
/gene_synonym="PCCX1"
/gene_synonym="PHF18"
/db_xref="GeneID:30827"
/db_xref="HGNC:HGNC:24343"
/db_xref="MIM:609150"
CDS 102..2072
/gene="CXXC1"
/gene_synonym="2410002I16Rik"
/gene_synonym="5830420C16Rik"
/gene_synonym="CGBP"
/gene_synonym="hCGBP"
/gene_synonym="HsT2645"
/gene_synonym="PCCX1"
/gene_synonym="PHF18"
/codon_start=1
/product="CXXC finger 1 (PHD domain)"
/protein_id="AAH14940.1"
/db_xref="GeneID:30827"
/db_xref="HGNC:HGNC:24343"
/db_xref="MIM:609150"
/translation="MEGDGSDPEPPDAGEDSKSENGENAPIYCICRKPDINCFMIGCD
NCNEWFHGDCIRITEKMAKAIREWYCRECREKDPKLEIRYRHKKSRERDGNERDSSEP
RDEGGGRKRPVPDPDLQRRAGSGTGVGAMLARGSASPHKSSPQPLVATPSQHHQQQQQ
QIKRSARMCGECEACRRTEDCGHCDFCRDMKKFGGPNKIRQKCRLRQCQLRARESYKY
FPSSLSPVTPSESLPRPRRPLPTQQQPQPSQKLGRIREDEGAVASSTVKEPPEATATP
EPLSDEDLPLDPDLYQDFCAGAFDDHGLPWMSDTEESPFLDPALRKRAVKVKHVKRRE
KKSEKKKEERYKRHRQKQKHKDKWKHPERADAKDPASLPQCLGPGCVRPAQPSSKYCS
DDCGMKLAANRIYEILPQRIQQWQQSPCIAEEHGKKLLERIRREQQSARTRLQEMERR
FHELEAIILRAKQQAVREDEESNEGDSDDTDLQIFCVSCGHPINPRVALRHMERCYAK
YESQTSFGSMYPTRIEGATRLFCDVYNPQSKTYCKRLQVLCPEHSRDPKVPADEVCGC
PLVRDVFELTGDFCRLPKRQCNRHYCWEKLRRAEVDLERVRVWYKLDELFEQERNVRT
AMTNRAGLLALMLHQTIQHDPLTTDLRSSADR"
BASE COUNT 512 a 686 c 717 g 416 t
ORIGIN
1 cggacgcgtg ggttgcaacc gcctgggacg ccgccgagtg gtctgtgcag gttcgcgggt
61 cgctggcggg ggtcgtgagg gagtgcgccg ggagcggaga tatggaggga gatggttcag
121 acccagagcc tccagatgcc ggggaggaca gcaagtccga gaatggggag aatgcgccca
181 tctactgcat ctgccgcaaa ccggacatca actgcttcat gatcgggtgt gacaactgca
241 atgagtggtt ccatggggac tgcatccgga tcactgagaa gatggccaag gccatccggg
301 agtggtactg tcgggagtgc agagagaaag accccaagct agagattcgc tatcggcaca
361 agaagtcacg ggagcgggat ggcaatgagc gggacagcag tgagccccgg gatgagggtg
421 gagggcgcaa gaggcctgtc cctgatccag acctgcagcg ccgggcaggg tcagggacag
481 gggttggggc catgcttgct cggggctctg cttcgcccca caaatcctct ccgcagccct
541 tggtggccac acccagccag catcaccagc agcagcagca gcagatcaaa cggtcagccc
601 gcatgtgtgg tgagtgtgag gcatgtcggc gcactgagga ctgtggtcac tgtgatttct
661 gtcgggacat gaagaagttc gggggcccca acaagatccg gcagaagtgc cggctgcgcc
721 agtgccagct gcgggcccgg gaatcgtaca agtacttccc ttcctcgctc tcaccagtga
781 cgccctcaga gtccctgcca aggccccgcc ggccactgcc cacccaacag cagccacagc
841 catcacagaa gttagggcgc atccgtgaag atgagggggc agtggcgtca tcaacagtca
901 aggagcctcc tgaggctaca gccacacctg agccactctc agatgaggac ctacctctgg
961 atcctgacct gtatcaggac ttctgtgcag gggcctttga tgaccatggc ctgccctgga
1021 tgagcgacac agaagagtcc ccattcctgg accccgcgct gcggaagagg gcagtgaaag
1081 tgaagcatgt gaagcgtcgg gagaagaagt ctgagaagaa gaaggaggag cgatacaagc
1141 ggcatcggca gaagcagaag cacaaggata aatggaaaca cccagagagg gctgatgcca
1201 aggaccctgc gtcactgccc cagtgcctgg ggcccggctg tgtgcgcccc gcccagccca
1261 gctccaagta ttgctcagat gactgtggca tgaagctggc agccaaccgc atctacgaga
1321 tcctccccca gcgcatccag cagtggcagc agagcccttg cattgctgaa gagcacggca
1381 agaagctgct cgaacgcatt cgccgagagc agcagagtgc ccgcactcgc cttcaggaaa
1441 tggaacgccg attccatgag cttgaggcca tcattctacg tgccaagcag caggctgtgc
1501 gcgaggatga ggagagcaac gagggtgaca gtgatgacac agacctgcag atcttctgtg
1561 tttcctgtgg gcaccccatc aacccacgtg ttgccttgcg ccacatggag cgctgctacg
1621 ccaagtatga gagccagacg tcctttgggt ccatgtaccc cacacgcatt gaaggggcca
1681 cacgactctt ctgtgatgtg tataatcctc agagcaaaac atactgtaag cggctccagg
1741 tgctgtgccc cgagcactca cgggacccca aagtgccagc tgacgaggta tgcgggtgcc
1801 cccttgtacg tgatgtcttt gagctcacgg gtgacttctg ccgcctgccc aagcgccagt
1861 gcaatcgcca ttactgctgg gagaagctgc ggcgtgcgga agtggacttg gagcgcgtgc
1921 gtgtgtggta caagctggac gagctgtttg agcaggagcg caatgtgcgc acagccatga
1981 caaaccgcgc gggattgctg gccctgatgc tgcaccagac gatccagcac gatcccctca
2041 ctaccgacct gcgctccagt gccgaccgct gagcctcctg gcccggaccc cttacaccct
2101 gcattccaga tgggggagcc gcccggtgcc cgtgtgtccg ttcctccact catctgtttc
2161 tccggttctc cctgtgccca tccaccggtt gaccgcccat ctgcctttat cagagggact
2221 gtccccgtcg acatgttcag tgcctggtgg ggctgcggag tccactcatc cttgcctcct
2281 ctccctgggt tttgttaata aaattttgaa gaaaccaaaa aaaaaaaaaa a
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