LOCUS BC014881 1532 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chromosome 9 open reading frame 80, mRNA (cDNA clone
MGC:10165 IMAGE:3907074), complete cds.
ACCESSION BC014881
VERSION BC014881.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1532)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1532)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 15 Row: b Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24308268.
FEATURES Location/Qualifiers
source 1..1532
/db_xref="H-InvDB:HIT000036880"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:10165 IMAGE:3907074"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1532
/gene="C9orf80"
/gene_synonym="HSPC043"
/gene_synonym="RP11-276E15.2"
/db_xref="GeneID:58493"
/db_xref="HGNC:HGNC:24994"
CDS 178..492
/gene="C9orf80"
/gene_synonym="HSPC043"
/gene_synonym="RP11-276E15.2"
/codon_start=1
/product="chromosome 9 open reading frame 80"
/protein_id="AAH14881.1"
/db_xref="GeneID:58493"
/db_xref="HGNC:HGNC:24994"
/translation="MAANSSGQGFQNKNRVAILAELDKEKRKLLMQNQSSTNHPGASI
ALSRPSLNKDFRDHAEQQHIAAQQKAALQHAHAHSSGYFITQDSAFGNLILPVLPRLD
PE"
BASE COUNT 459 a 305 c 331 g 437 t
ORIGIN
1 agcgcagcgg gggcgggaag gttgtagtgc cgcgagttga gctcctcttg cctaagtggt
61 cgcgccccct ttaagagcag cgattgtaag gagaggcggt cccggtgtcc tcgggtccca
121 ggtgattgtg aagtgctgac caattgccac tggacatact tgaaacaaaa taggaaaatg
181 gcagcaaact cttcaggaca aggttttcaa aacaaaaata gagttgcaat cttggcagaa
241 ctggacaaag agaaaagaaa actacttatg cagaaccagt cttcaacaaa tcatcctgga
301 gctagcattg cactctcgag accctctctt aataaggact tccgggatca cgctgagcag
361 cagcatattg cagcccaaca gaaggcagct ttgcagcatg ctcatgcaca ttcatctgga
421 tacttcatca ctcaagactc tgcatttggg aaccttattc ttcctgtttt acctcgcctt
481 gacccagaat gaagaaaaca tttgcgatgg aaaagtgact ttgtaatatc aaatgccaaa
541 gctactatca ttcagtgcta catgaactgt gactttaaga attttggtga actttgatat
601 tttttgtttg tctgaaagaa aggaatgtgt aagtgaaagc tgaaagaaga ataaccagga
661 tgatgagagc tgtggaagct gtatcgtcca aggaattgat tatgtaccgt gactgtaact
721 tttttgtaat gctgtttaac tctcaatcag actgtgaact ggatggtcac gaagtcattc
781 cccaactcct agcaagtttg actgaatata tcatgtccac agtagatttt caagaatcat
841 ttatagtact taactttaaa gaaacaaggc tgcttttaaa aaatgaacta ataggcttaa
901 atcaattgca tccatatttg ctgtttatag gattgctatc agtatacctt ttgcgtttat
961 agtcaacatg tatcatcctg aaatattctt tctggactta taactacttc cccctttttc
1021 actttaaaac aaacctcaag aataaattac taaccagtct taaccatctt ttataaacat
1081 atgctcttat aaatgttgtg actagatgca attaaaaata atagggaatg tggtaggttt
1141 ttaatttgta catcctctta tttagtgtta ccacataaat gatgagtttg tgtggttctg
1201 ttttccattt ttgttctaac tgaaaacttt ttggctgggc acggtgcctc atgcctgtaa
1261 tcccagcact ttgggaggcc aaggcgggca gatcacttga gatcaggagt ttgagaccag
1321 cctggccaac atggtgaaac cctgtctcta ctaaaagtat aaaaaattag ccatgtgtgg
1381 tggcacacgc ctgtaatccc agctactcag gaggctgagg caggagaatc gcttgaacct
1441 gggaggcagg ggttgcagtg agctgagacg gtgtcactgc actccagcct gggtgacagt
1501 gagtctttgt ctcaaagaaa aaaaaaaaaa aa
//