LOCUS BC014842 2349 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nucleoporin 62kDa, mRNA (cDNA clone MGC:21169
IMAGE:4499630), complete cds.
ACCESSION BC014842
VERSION BC014842.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2349)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2349)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-OCT-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 28 Row: e Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34335245.
FEATURES Location/Qualifiers
source 1..2349
/db_xref="H-InvDB:HIT000036866"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21169 IMAGE:4499630"
/tissue_type="Bladder, transitional cell papilloma"
/clone_lib="NIH_MGC_93"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2349
/gene="NUP62"
/gene_synonym="DKFZp547L134"
/gene_synonym="FLJ20822"
/gene_synonym="MGC841"
/gene_synonym="p62"
/db_xref="GeneID:23636"
/db_xref="HGNC:HGNC:8066"
/db_xref="MIM:605815"
CDS 81..1649
/gene="NUP62"
/gene_synonym="DKFZp547L134"
/gene_synonym="FLJ20822"
/gene_synonym="MGC841"
/gene_synonym="p62"
/codon_start=1
/product="nucleoporin 62kDa"
/protein_id="AAH14842.1"
/db_xref="GeneID:23636"
/db_xref="HGNC:HGNC:8066"
/db_xref="MIM:605815"
/translation="MSGFNFGGTGAPTGGFTFGTAKTATTTPATGFSFSTSGTGGFNF
GAPFQPATSTPSTGLFSLATQTPATQTTGFTFGTATLASGGTGFSLGIGASKLNLSNT
AATPAMANPSGFGLGSSNLTNAISSTVTSSQGTAPTGFVFGPSTTSVAPATTSGGFSF
TGGSTAQPSGFNIGSAGNSAQPTAPATLPFTPATPAATTAGATQPAAPTPTATITSTG
PSLFASIATAPTSSATTGLSLCTPVTTAGAPTAGTQGFSLKAPGAASGTSTTTSTAAT
ATATTTSSSSTTGFALNLKPLAPAGIPSNTAAAVTAPPGPGAAAGAAASSAMTYAQLE
SLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQE
LDFILSQQKELEDLLSPLEELVKEQSGTIYLQHADEEREKTYKLAENIDAQLKRMAQD
LKDIIEHLNTSGAPADTSDPLQQICKILNAHMDSLQWIDQNSALLQRKVEEVTKVCEG
RRKEQERSFRITFD"
BASE COUNT 542 a 736 c 626 g 445 t
ORIGIN
1 gagaaatctt cccaaggctg cagacaccga cggatttgct ttgggagcca gagtagctgc
61 cgccaccaga gtccggagcc atgagcgggt ttaattttgg aggcactggg gcccctacag
121 gcgggttcac gtttggcact gcaaagacgg caacaaccac acctgctaca gggttttctt
181 tctccacctc tggcactgga gggtttaatt ttggggctcc cttccaacca gccacaagta
241 ccccttccac cggcctgttc tcacttgcca cccagactcc ggccacacag acgacaggct
301 tcacttttgg aacagcgact cttgcttcgg ggggaactgg attttctttg gggatcggtg
361 cttcaaagct caacttgagc aacacagctg ccaccccagc catggcaaac cccagcggct
421 ttgggctggg cagcagcaac ctcactaatg ccatatcgag caccgtcacc tccagccagg
481 gcacagcacc caccggcttt gtgtttggcc cctccaccac ctctgtggct ccagctacca
541 catctggagg cttctcattc actggtggaa gcacggccca accctccggt ttcaacattg
601 gctcagcagg gaattcagcc cagcccacgg cacctgccac gttgcccttc actccggcca
661 cgccagcagc caccacagca ggtgccacac agccagctgc tcccacaccc acagccacca
721 tcaccagtac tgggcccagc ctctttgcgt caatagcaac tgctccaacc tcatctgcca
781 ccactggact ctccctctgt acccctgtga ccacagcggg cgcccccact gctgggacac
841 agggcttcag cttaaaggca cctggagcag cttccggcac ctccacaaca acatccaccg
901 ctgccaccgc caccgccacc accaccagca gcagcagcac caccggcttt gccttgaatt
961 taaaaccact ggcgccagcc gggatcccca gcaatacagc agctgccgtg accgctccac
1021 ctggccctgg cgcagctgca ggggcggctg ccagctccgc catgacctac gcgcagctgg
1081 agagcctgat caacaaatgg agcctggagc tagaggacca ggagcggcac ttcctccagc
1141 aggccaccca ggtcaacgcc tgggaccgca cgctgatcga gaatggagaa aagatcacca
1201 gcctgcaccg cgaggtggag aaggtgaagc tggaccagaa gaggctggac caggagctcg
1261 acttcatcct gtcccagcag aaggagctgg aagacctgct gagcccactg gaggagttgg
1321 tcaaggagca gagcgggacc atctacctgc agcacgcgga tgaggagcgt gagaaaacct
1381 acaagctggc tgagaacatc gacgcacagc tcaagcgcat ggcccaggat ctcaaggaca
1441 tcatcgagca cctgaacacg tccggggccc ccgccgacac cagtgaccca ctgcagcaga
1501 tctgcaagat cctcaatgcg cacatggact cactgcagtg gatcgaccag aactcggccc
1561 tgctgcagag gaaggtggag gaggtgacca aggtgtgcga gggccggcgc aaggagcagg
1621 agcgcagctt ccggatcacc tttgactgag cgacagcagc cctggggccc gcaggtccct
1681 agggagttca tgaggggaat gcgccctgtt gtctgtagtt tggggttgtg gcaagatact
1741 tgtttgtttg tttctttctt tcacatgact gcccttgaca tgatcgctgt gtgctttgcg
1801 tttttccatt taggagggta ttctgggcct tctgcccagg cagcagcctc atgggtgtgg
1861 cttctgtggc tttcatttga gtatctttgg ccccttttca cctactgcga ccacccacct
1921 catcctggct cagcctggtg atggagaagt gctgatggtc ttggtcccag ccagggtcgt
1981 gggggcagcc actctctcca aagcatagtc ataggtgtca tgaaaaaata ccaaatgtaa
2041 gagaacctcc aagtcagggc gcagtggctc acccctgtaa tctcagcact ttgggtggcc
2101 aaggcgggca gatgacttga ggtcaggagt tcaagaccag cctggccaac atggtgaaac
2161 cccgtctcta ctaaaaatac aaaaattagt caggtgtggt ggacgcctgt gatctcaatc
2221 tcagctactc gggaggctga ggcaggagaa tcacttgaac ccaggaggtg ttgcagtgaa
2281 ccaagatcac accactgcac tccagcctag gcaacagaga ctctgtctca aaaaaaaaaa
2341 aaaaaaaaa
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