LOCUS BC014462 3632 bp mRNA linear HUM 27-OCT-2006
DEFINITION Homo sapiens cadherin 3, type 1, P-cadherin (placental), mRNA (cDNA
clone MGC:23083 IMAGE:4870356), complete cds.
ACCESSION BC014462
VERSION BC014462.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3632)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3632)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: l Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45269142.
FEATURES Location/Qualifiers
source 1..3632
/db_xref="H-InvDB:HIT000088407"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23083 IMAGE:4870356"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3632
/gene="CDH3"
/gene_synonym="CDHP"
/gene_synonym="HJMD"
/gene_synonym="PCAD"
/db_xref="GeneID:1001"
/db_xref="HGNC:HGNC:1762"
/db_xref="MIM:114021"
CDS 388..2742
/gene="CDH3"
/gene_synonym="CDHP"
/gene_synonym="HJMD"
/gene_synonym="PCAD"
/codon_start=1
/product="CDH3 protein"
/protein_id="AAH14462.1"
/db_xref="GeneID:1001"
/db_xref="HGNC:HGNC:1762"
/db_xref="MIM:114021"
/translation="MGLPRGPLASLLLLQVCWLQCAASEPCRAVFREAEVTLEAGGAE
QEPGQALGKVFMGCPGQEPALFSTDNDDFTVRNGETVQERRSLKERNPLKIFPSKRIL
RRHKRDWVVAPISVPENGKGPFPQRLNQLKSNKDRDTKIFYSITGPGADSPPEGVFAV
EKETGWLLLNKPLDREEIAKYELFGHAVSENGASVEDPMNISIIVTDQNDHKPKFTQD
TFRGSVLEGVLPGTSVMQVTATDEDDAIYTYNGVVAYSIHSQEPKDPHDLMFTIHRST
GTISVISSGLDREKVPEYTLTIQATDMDGDGSTTTAVAVVEILDANDNAPMFDPQKYE
AHVPENAVGHEVQRLTVTDLDAPNSPAWRATYLIMGGDDGDHFTITTHPESNQGILTT
RKGLDFEAKNQHTLYVEVTNEAPFVLKLPTSTATIVVHVEDVNEAPVFVPPSKVVEVQ
EGIPTGEPVCVYTAEDPDKENQKISYRILRDPAGWLAMDPDSGQVTAVGTLDREDEQF
VRNNIYEVMVLAMDNGSPPTTGTGTLLLTLIDVNDHGPVPEPRQITICNQSPVRQVLN
ITDKDLSPHTSPFQAQLTDDSDIYWTAEVNEEGDTVVLSLKKFLKQDTYDVHLSLSDH
GNKEQLTVIRATVCDCHGHVETCPGPWKGGFILPVLGAVLALLFLLLVLLLLVRKKRK
IKEPLLLPEDDTRDNVFYYGEEGGGEEDQDYDITQLHRGLEARPEVVLRNDVAPTIIP
TPMYRPRPANPDEIGNFIIEGRGERGSQRGNGGLQLARGRTRRS"
BASE COUNT 849 a 1033 c 1009 g 741 t
ORIGIN
1 cttttttccg ctgtagccgc aaggcaagga aacatttctc ttcccgtact gaggaggctg
61 aggagtgcac tgggtgttct tttctcctct aacccagaac tgcgagacag aggctgagtc
121 cctgtaaaga acagctccag aaaagccagg agagcgcagg agggcatccg ggaggccagg
181 aggggttcgc tggggcctca accgcaccca catcggtccc acctgcgagg gggcgggacc
241 tcgtggcgct ggaccaatca gcacccacct gcgctcacct ggcctcctcc cgctggctcc
301 cgggggctgc ggtgctcaaa ggggcaagag ctgagcggaa caccggcccg ccgtcgcggc
361 agctgcttca cccctctctc tgcagccatg gggctccctc gtggacctct cgcgtctctc
421 ctccttctcc aggtttgctg gctgcagtgc gcggcctccg agccgtgccg ggcggtcttc
481 agggaggctg aagtgacctt ggaggcggga ggcgcggagc aggagcccgg ccaggcgctg
541 gggaaagtat tcatgggctg ccctgggcaa gagccagctc tgtttagcac tgataatgat
601 gacttcactg tgcggaatgg cgagacagtc caggaaagaa ggtcactgaa ggaaaggaat
661 ccattgaaga tcttcccatc caaacgtatc ttacgaagac acaagagaga ttgggtggtt
721 gctccaatat ctgtccctga aaatggcaag ggtcccttcc cccagagact gaatcagctc
781 aagtctaata aagatagaga caccaagatt ttctacagca tcacggggcc gggggcagac
841 agcccccctg agggtgtctt cgctgtagag aaggagacag gctggttgtt gttgaataag
901 ccactggacc gggaggagat tgccaagtat gagctctttg gccacgctgt gtcagagaat
961 ggtgcctcag tggaggaccc catgaacatc tccatcatcg tgaccgacca gaatgaccac
1021 aagcccaagt ttacccagga caccttccga gggagtgtct tagagggagt cctaccaggt
1081 acttctgtga tgcaggtgac agccacagat gaggatgatg ccatctacac ctacaatggg
1141 gtggttgctt actccatcca tagccaagaa ccaaaggacc cacacgacct catgttcaca
1201 attcaccgga gcacaggcac catcagcgtc atctccagtg gcctggaccg ggaaaaagtc
1261 cctgagtaca cactgaccat ccaggccaca gacatggatg gggacggctc caccaccacg
1321 gcagtggcag tagtggagat ccttgatgcc aatgacaatg ctcccatgtt tgacccccag
1381 aagtacgagg cccatgtgcc tgagaatgca gtgggccatg aggtgcagag gctgacggtc
1441 actgatctgg acgcccccaa ctcaccagcg tggcgtgcca cctaccttat catgggcggt
1501 gacgacgggg accattttac catcaccacc caccctgaga gcaaccaggg catcctgaca
1561 accaggaagg gtttggattt tgaggccaaa aaccagcaca ccctgtacgt tgaagtgacc
1621 aacgaggccc cttttgtgct gaagctccca acctccacag ccaccatagt ggtccacgtg
1681 gaggatgtga atgaggcacc tgtgtttgtc ccaccctcca aagtcgttga ggtccaggag
1741 ggcatcccca ctggggagcc tgtgtgtgtc tacactgcag aagaccctga caaggagaat
1801 caaaagatca gctaccgcat cctgagagac ccagcagggt ggctagccat ggacccagac
1861 agtgggcagg tcacagctgt gggcaccctc gaccgtgagg atgagcagtt tgtgaggaac
1921 aacatctatg aagtcatggt cttggccatg gacaatggaa gccctcccac cactggcacg
1981 ggaacccttc tgctaacact gattgatgtc aacgaccatg gcccagtccc tgagccccgt
2041 cagatcacca tctgcaacca aagccctgtg cgccaggtgc tgaacatcac ggacaaggac
2101 ctgtctcccc acacctcccc tttccaggcc cagctcacag atgactcaga catctactgg
2161 acggcagagg tcaacgagga aggtgacaca gtggtcttgt ccctgaagaa gttcctgaag
2221 caggatacat atgacgtgca cctttctctg tctgaccatg gcaacaaaga gcagctgacg
2281 gtgatcaggg ccactgtgtg cgactgccat ggccatgtcg aaacctgccc tggaccctgg
2341 aaaggaggtt tcatcctccc tgtgctgggg gctgtcctgg ctctgctgtt cctcctgctg
2401 gtgctgcttt tgttggtgag aaagaagcgg aagatcaagg agcccctcct actcccagaa
2461 gatgacaccc gtgacaacgt cttctactat ggcgaagagg ggggtggcga agaggaccag
2521 gactatgaca tcacccagct ccaccgaggt ctggaggcca ggccggaggt ggttctccgc
2581 aatgacgtgg caccaaccat catcccgaca cccatgtacc gtcctaggcc agccaaccca
2641 gatgaaatcg gcaactttat aattgagggg aggggagaga ggggctcaca gagaggaaat
2701 ggaggcttgc agctggcaag aggcaggacc cgccgctcct aactacctgt tctctgttgc
2761 cgcagaacct gaaggcggct aacacagacc ccacagcccc gccctacgac accctcttgg
2821 tgttcgacta tgagggcagc ggctccgacg ccgcgtccct gagctccctc acctcctccg
2881 cctccgacca agaccaagat tacgattatc tgaacgagtg gggcagccgc ttcaagaagc
2941 tggcagacat gtacggtggc ggggaggacg actaggcggc ctgcctgcag ggctggggac
3001 caaacgtcag gccacagagc atctccaagg ggtctcagtt cccccttcag ctgaggactt
3061 cggagcttgt caggaagtgg ccgtagcaac ttggcggaga caggctatga gtctgacgtt
3121 agagtggttg cttccttagc ctttcaggat ggaggaatgt gggcagtttg acttcagcac
3181 tgaaaacctc tccacctggg ccagggttgc ctcagaggcc aagtttccag aagcctctta
3241 cctgccgtaa aatgctcaac cctgtgtcct gggcctgggc ctgctgtgac tgacctacag
3301 tggactttct ctctggaatg gaaccttctt aggcctcctg gtgcaactta attttttttt
3361 ttaatgctat cttcaaaacg ttagagaaag ttcttcaaaa gtgcagccca gagctgctgg
3421 gcccactggc cgtcctgcat ttctggtttc cagaccccaa tgcctcccat tcggatggat
3481 ctctgcgttt ttatactgag tgtgcctagg ttgcccctta ttttttattt tccctgttgc
3541 gttgctatag atgaagggtg aggacaatcg tgtatatgta ctagaacttt tttattaaag
3601 aaacttttcc cagaaaaaaa aaaaaaaaaa aa
//