LOCUS BC014449 1244 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens patatin-like phospholipase domain containing 3, mRNA
(cDNA clone IMAGE:4870514), partial cds.
ACCESSION BC014449
VERSION BC014449.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1244)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1244)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 34 Row: l Column: 13.
FEATURES Location/Qualifiers
source 1..1244
/db_xref="H-InvDB:HIT000036706"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4870514"
/tissue_type="Skin, melanotic melanoma, high MDR."
/clone_lib="NIH_MGC_49"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1244
/gene="PNPLA3"
/gene_synonym="iPLA(2)epsilon"
/db_xref="GeneID:80339"
/db_xref="HGNC:HGNC:18590"
/db_xref="MIM:609567"
CDS <1..548
/gene="PNPLA3"
/gene_synonym="iPLA(2)epsilon"
/codon_start=3
/product="PNPLA3 protein"
/protein_id="AAH14449.2"
/db_xref="GeneID:80339"
/db_xref="HGNC:HGNC:18590"
/db_xref="MIM:609567"
/translation="LLDHLRLSILPWDESILDTLSPRLATALSEEMKDKGGYMSKICN
LLPIRIMSYVMLPCTLPVESAIAIVQRLVTWLPDMPDDVLWLQWVTSQVFTRVLMCLL
PASRSQMPVSSQQASPCTPEQDWPCWTPCSPEGCPAETKAEATPRSILRSSLNFFLGN
KVPAGAEGLSTFPSFSLEKSL"
BASE COUNT 304 a 299 c 325 g 316 t
ORIGIN
1 agctgctaga ccacctgcgt ctcagcatcc tgccctggga tgagagcatc ctggacaccc
61 tctcgcccag gctcgctaca gcactgagtg aagaaatgaa agacaaaggt ggatacatga
121 gcaagatttg caacttgcta cccattagga taatgtctta tgtaatgctg ccctgtaccc
181 tgcctgtgga atctgccatt gcgattgtcc agagactggt gacatggctt ccagatatgc
241 ccgacgatgt cctgtggttg cagtgggtga cctcacaggt gttcactcga gtgctgatgt
301 gtctgctccc cgcctccagg tcccaaatgc cagtgagcag ccaacaggcc tccccatgca
361 cacctgagca ggactggccc tgctggactc cctgctcccc cgagggctgt ccagcagaga
421 ccaaagcaga ggccaccccg cggtccatcc tcaggtccag cctgaacttc ttcttgggca
481 ataaagtacc tgctggtgct gaggggctct ccacctttcc cagtttttca ctagagaaga
541 gtctgtgagt cacttgagga ggcgagtcta gcagattctt tcagaggtgc taaagtttcc
601 catctttgtg tagctacctc cgcattgctg tgtagtgacc cctgcctgtg acgtggagga
661 tcccagcctc tgagctgagt tggttttatg aaaagctagg aagcaacctt tcgcctgtgc
721 agcggtccag cacttaactc taatacatca gcatgcgtta attcagctgg ttgggaaatg
781 acaccaggaa gcccagtgca gagggtccct tactgactgt ttcgtggccc tattaatggt
841 cagactgttc cagcatgagg ttcttagaat gacaggtgtt tggatgggtg ggggccttgt
901 gatggggggt aggctggccc atgtgtgatc ttgtggggtg gagggaagag aatagcatga
961 tcccacttcc ccatgctgtg ggaaggggtg cagttcgtcc ccaagaacga cactgcctgt
1021 caggtggtct gcaaagatga taaccttgac tactaaaaac gtctccatgg cgggggtaac
1081 aagatgataa tctacttaat tttagaacac ctttttcacc taactaaaat aatgtttaaa
1141 gagttttgta taaaaatgta aggaagcgtt gttacctgtt gaattttgta ttatgtgaat
1201 cagtgagatg ttagtagaat aagccttaaa aaaaaaaaaa aaaa
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