LOCUS BC014439 2133 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens sphingosine kinase 1, mRNA (cDNA clone MGC:22956 IMAGE:4871343), complete cds. ACCESSION BC014439 VERSION BC014439.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2133) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2133) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (17-SEP-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 34 Row: l Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 41282001. FEATURES Location/Qualifiers source 1..2133 /db_xref="H-InvDB:HIT000050596" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:22956 IMAGE:4871343" /tissue_type="Skin, melanotic melanoma, high MDR." /clone_lib="NIH_MGC_49" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2133 /gene="SPHK1" /gene_synonym="SPHK" /db_xref="GeneID:8877" /db_xref="HGNC:HGNC:11240" /db_xref="MIM:603730" CDS 435..1847 /gene="SPHK1" /gene_synonym="SPHK" /codon_start=1 /product="sphingosine kinase 1" /protein_id="AAH14439.1" /db_xref="GeneID:8877" /db_xref="HGNC:HGNC:11240" /db_xref="MIM:603730" /translation="MSAQVLGFLRSWTPLPLAAPRGPAAAGNDAGAPTATAPGGEGEP HSRPCDARLGSTDKELKAGAAATGSAPTAPGTPWQREPRVEVMDPAGGPRGVLPRPCR VLVLLNPRGGKGKALQLFRSHVQPLLAEAEISFTLMLTERRNHARELVRSEELGRWDA LVVMSGDGLMHEVVNGLMERPDWETAIQKPLCSLPAGSGNALAASLNHYAGYEQVTNE DLLTNCTLLLCRRLLSPMNLLSLHTASGLRLFSVLSLAWGFIADVDLESEKYRRLGEM RFTLGTFLRLAALRTYRGRLAYLPVGRVGSKTPASPVVVQQGPVDAHLVPLEEPVPSH WTVVPDEDFVLVLALLHSHLGSEMFAAPMGRCAAGVMHLFYVRAGVSRAMLLRLFLAM EKGRHMEYECPYLVYVPVVAFRLEPKDGKGVFAVDGELMVSEAVQGQVHPNYFWMVSG CVEPPPSWKPQQMPPPEEPL" BASE COUNT 350 a 681 c 719 g 383 t ORIGIN 1 gcgaggccgg ggagtccgct ccagcggggc gctccagtcc ctcagacgtg ggctgagctt 61 gggacgagct gcgttccgcc ccaggccact gtagggaacg gcggtggcgc ctccccagca 121 aaccggaccg actgggtagg gccgcccacc ctgccttcgc gccgctcgtg gctcctgtgc 181 ggcccgccct cgcggggccc cgggaactgg gccacttgtc gcttgggcga gagcaggcgg 241 cagctggtgg cccggttcgg gcttggcttt ggcgcgaccc gggagcggct cccacgagcg 301 ccgcgcgcgt cgcaacggag cggggccctg agaagcgcgc gccgcggctc ccaccgctct 361 ggagctccgg gcaggggaca cggcaacctg gatggctggg gcagggatcc tctcccagaa 421 cttcgtgccc agcaatgtcc gctcaagttc tgggattttt acgcagctgg actcccctcc 481 ccctggcagc cccgaggggt ccagccgccg cagggaatga cgccggtgct cctacagcca 541 cggctccggg cggggaaggc gagccccaca gccggccctg cgacgcccgc ctgggcagca 601 ccgataagga gctgaaggca ggagccgccg ccacgggcag cgcccccaca gcgccaggga 661 ccccctggca gcgggagccg cgggtcgagg ttatggatcc agcgggcggc ccccggggcg 721 tgctcccgcg gccctgccgc gtgctggtgc tgctgaaccc gcgcggcggc aagggcaagg 781 ccttgcagct cttccggagt cacgtgcagc cccttttggc tgaggctgaa atctccttca 841 cgctgatgct cactgagcgg cggaaccacg cgcgggagct ggtgcggtcg gaggagctgg 901 gccgctggga cgctctggtg gtcatgtctg gagacgggct gatgcacgag gtggtgaacg 961 ggctcatgga gcggcctgac tgggagaccg ccatccagaa gcccctgtgt agcctcccag 1021 caggctctgg caacgcgctg gcagcttcct tgaaccatta tgctggctat gagcaggtca 1081 ccaatgaaga cctcctgacc aactgcacgc tattgctgtg ccgccggctg ctgtcaccca 1141 tgaacctgct gtctctgcac acggcttcgg ggctgcgcct cttctctgtg ctcagcctgg 1201 cctggggctt cattgctgat gtggacctag agagtgagaa gtatcggcgt ctgggggaga 1261 tgcgcttcac tctgggcacc ttcctgcgtc tggcagccct gcgcacctac cgcggccgac 1321 tggcctacct ccctgtagga agagtgggtt ccaagacacc tgcctccccc gttgtggtcc 1381 agcagggccc ggtagatgca caccttgtgc cactggagga gccagtgccc tctcactgga 1441 cagtggtgcc cgacgaggac tttgtgctag tcctggcact gctgcactcg cacctgggca 1501 gtgagatgtt tgctgcaccc atgggccgct gtgcagctgg cgtcatgcat ctgttctacg 1561 tgcgggcggg agtgtctcgt gccatgctgc tgcgcctctt cctggccatg gagaagggca 1621 ggcatatgga gtatgaatgc ccctacttgg tatacgtgcc cgtggtcgcc ttccgtttgg 1681 agcccaagga tgggaaaggt gtgtttgcag tggatgggga attgatggtt agcgaggccg 1741 tgcagggcca ggtgcaccca aactacttct ggatggtcag cggttgcgtg gagcccccgc 1801 ccagctggaa gccccagcag atgccaccgc cagaagagcc cttatgaccc ctgggccgcg 1861 ctgtgcctta gtgtctactt gcaggaccct tcctccttcc ctagggctgc agggcctgtc 1921 cacagctcct gtgggggtgg aggagactcc tctggagaag ggtgagaagg tggaggctat 1981 gctttggggg gacaggccag aatgaagtcc tgggtcagga gcccagctgg ctgggcccag 2041 ctgcctatgt aaggccttct agtttgttct gagaccccca ccccacgaac caaatccaaa 2101 taaagtgaca ttcccaaaaa aaaaaaaaaa aaa //