LOCUS BC014425 3053 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens rhomboid 5 homolog 1 (Drosophila), mRNA (cDNA clone
MGC:20194 IMAGE:4650826), complete cds.
ACCESSION BC014425
VERSION BC014425.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3053)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3053)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: o Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21359942.
FEATURES Location/Qualifiers
source 1..3053
/db_xref="H-InvDB:HIT000036691"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20194 IMAGE:4650826"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3053
/gene="RHBDF1"
/gene_synonym="Dist1"
/gene_synonym="EGFR-RS"
/gene_synonym="FLJ2235"
/gene_synonym="FLJ22357"
/gene_synonym="gene -89"
/gene_synonym="gene -90"
/gene_synonym="hDist1"
/db_xref="GeneID:64285"
/db_xref="HGNC:HGNC:20561"
CDS 111..2678
/gene="RHBDF1"
/gene_synonym="Dist1"
/gene_synonym="EGFR-RS"
/gene_synonym="FLJ2235"
/gene_synonym="FLJ22357"
/gene_synonym="gene -89"
/gene_synonym="gene -90"
/gene_synonym="hDist1"
/codon_start=1
/product="rhomboid 5 homolog 1 (Drosophila)"
/protein_id="AAH14425.1"
/db_xref="GeneID:64285"
/db_xref="HGNC:HGNC:20561"
/translation="MSEARRDSTSSLQRKKPPWLKLDIPSAVPLTAEEPSFLQPLRRQ
AFLRSVSMPAETAHISSPHHELRRPVLQRQTSITQTIRRGTADWFGVSKDSDSTQKWQ
RKSIRHCSQRYGKLKPQVLRELDLPSQDNVSLTSTETPPPLYVGPCQLGMQKIIDPLA
RGRAFRVADDTAEGLSAPHTPVTPGAASLCSFSSSRSGFHRLPRRRKRESVAKMSFRA
AAALMKGRSVRDGTFRRARRRSFTPASFLEEDTTDFPDELDTSFFAREGILHEELSTY
PDEVFESPSEAALKDWEKAPEQADLTGGALDRSELERSHLMLPLERGWRKQKEGAAAP
QPKVRLRQEVVSTAGPRRGQRIAVPVRKLFAREKRPYGLGMVGRLTNRTYRKRIDSFV
KRQIEDMDDHRPFFTYWLTFVHSLVTILAVCIYGIAPVGFSQHETVDSVLRNRGVYEN
VKYVQQENFWIGPSSEALIHLGAKFSPCMRQDPQVHSFIRSAREREKHSACCVRNDRS
GCVQTSEEECSSTLAVWVKWPIHPSAPELAGHKRQFGSVCHQDPRVCDEPSSEDPHEW
PEDITKWPICTKNSAGNHTNHPHMDCVITGRPCCIGTKGRCEITSREYCDFMRGYFHE
EATLCSQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRD
LEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQI
LARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLPYISFGKFDLY
RKRCQIIIFQVVFLGLLAGLVVLFYVYPVRCEWCEFLTCIPFTDKFCEKYELDAQLH"
BASE COUNT 625 a 986 c 868 g 574 t
ORIGIN
1 ctcggcgcgg gcgccctccc ggccagcggc ggcagcccct cctccccggc gccctcagga
61 ccccccagag acccccggcg gcggcagcct gccttgctct gccaggaacc atgagtgagg
121 cccgcaggga cagcacgagc agcctgcagc gcaagaagcc accctggcta aagctggaca
181 ttccctctgc ggtgcccctg acggcagaag agcccagctt cctgcagccc ctgaggcgac
241 aggctttcct gaggagtgtg agtatgccag ccgagacagc ccacatctct tcaccccacc
301 atgagctccg gcggccggtg ctgcaacgcc agacgtccat cacacagacc atccgcaggg
361 ggaccgccga ctggtttgga gtgagcaagg acagtgacag cacccagaaa tggcagcgca
421 agagcatccg tcactgcagc cagcgctacg ggaagctgaa gccccaggtc ctccgggagc
481 tggacctgcc cagccaggac aacgtgtcgc tgaccagcac cgagacgcca cccccactct
541 acgtggggcc atgccagctg ggcatgcaga agatcataga ccccctggcc cgtggccgtg
601 ccttccgtgt ggcagatgac actgcggaag gcctgagtgc cccacacact cccgtcacgc
661 cgggtgctgc ctccctctgc tccttctcca gctcccgctc aggtttccac cggctcccgc
721 ggcggcgcaa gcgagagtcg gtggccaaga tgagcttccg ggcggccgca gcgctgatga
781 aaggccgctc cgttagggat ggcacctttc gccgggcacg gcgtcgaagc ttcactccag
841 ctagctttct ggaggaggac acaactgatt tccccgatga gctggacaca tccttctttg
901 cccgggaagg tatcctccat gaagagctgt ccacataccc ggatgaagtt ttcgagtccc
961 catcggaggc agcgctaaag gactgggaga aggcaccgga gcaggcggac ctcaccggcg
1021 gggccctgga ccgcagcgag cttgagcgca gccacctgat gctgcccttg gagcgaggct
1081 ggcggaagca gaaggagggc gccgcagccc cgcagcccaa ggtgcggctc cgacaggagg
1141 tggtgagcac cgcggggccg cgacggggcc agcgtatcgc ggtgccggtg cgcaagctct
1201 tcgcccggga gaagcggccg tatgggctgg gcatggtggg acggctcacc aaccgcacct
1261 accgcaagcg catcgacagc ttcgtcaagc gccagatcga ggacatggac gaccacaggc
1321 ccttcttcac ctactggctt accttcgtgc actcgctcgt caccatccta gccgtgtgca
1381 tctatggcat cgcgcccgtg ggcttctcgc agcatgagac ggtggactcg gtgctgcgga
1441 accgcggggt ctacgagaac gtcaagtacg tgcagcagga gaacttctgg atcgggccca
1501 gctcggaggc cctcatccac ctgggcgcca agttttcgcc ctgcatgcgc caggacccgc
1561 aggtgcacag cttcattcgc tcggcgcgcg agcgcgagaa gcactccgcc tgctgcgtgc
1621 gcaacgacag gtcgggctgc gtgcagacct cggaggagga gtgctcgtcc acgctggcag
1681 tgtgggtgaa gtggcccatc catcccagcg ccccagagct tgcgggccac aagagacagt
1741 ttggctctgt ctgccaccag gatcccaggg tgtgtgatga gccctcctcc gaagaccctc
1801 atgagtggcc agaagacatc accaagtggc cgatctgcac caaaaacagc gctgggaacc
1861 acaccaacca tccccacatg gactgtgtca tcacaggacg gccctgctgc attggcacca
1921 agggcaggtg tgagatcacc tcccgggagt actgtgactt catgaggggc tacttccatg
1981 aggaggccac gctctgctct caggtgcact gcatggatga tgtgtgtggg ctcctgcctt
2041 ttctcaaccc cgaggtgcct gaccagttct accgcctgtg gctatccctc ttcctgcacg
2101 ccgggatctt gcactgcctg gtgtccatct gcttccagat gactgtcctg cgggacctgg
2161 agaagctggc aggctggcac cgcatagcca tcatctacct gctgagtggt gtcaccggca
2221 acctggccag tgccatcttc ctgccatacc gagcagaggt gggtcctgct ggctcccagt
2281 tcggcatcct ggcctgcctc ttcgtggagc tcttccagag ctggcagatc ctggcgcggc
2341 cctggcgtgc cttcttcaag ctgctggctg tggtgctctt cctcttcacc tttgggctgc
2401 tgccgtggat tgacaacttt gcccacatct cggggttcat cagtggcctc ttcctctcct
2461 tcgccttctt gccctacatc agctttggca agttcgacct gtaccggaaa cgctgccaga
2521 tcatcatctt tcaggtggtc ttcctgggcc tcctggctgg cctggtggtc ctcttctacg
2581 tctatcctgt ccgctgtgag tggtgtgagt tcctcacctg catccccttc actgacaagt
2641 tctgtgagaa gtacgaactg gacgctcagc tccactgagc tggctgcggg ctccagcggc
2701 cgtgtgctcc agcaggccag agccagacac gacctccctg agcctcacag gcttacagga
2761 gtcacctgct ccatgtgggg actggcctgt ttcctgaaca cagacctctt tcttgtgcct
2821 tgttcacttc tgttgaaccc ctcgtactgc cgggcattta ttatactact tcctgtcata
2881 accttctaac ttgtttcttg acgaccacct catgtggcca ataaatggac tgggagcgtt
2941 ttagctgcca ttaacttgaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3001 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//