LOCUS BC014342 1166 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens tetratricopeptide repeat domain 6, mRNA (cDNA clone
IMAGE:3997660), partial cds.
ACCESSION BC014342
VERSION BC014342.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1166)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1166)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (17-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC014342.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 31 Row: k Column: 4.
FEATURES Location/Qualifiers
source 1..1166
/db_xref="H-InvDB:HIT000088361"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3997660"
/tissue_type="Bladder, carcinoma"
/clone_lib="NIH_MGC_53"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene <1..1166
/gene="TTC6"
/db_xref="GeneID:115669"
CDS <1..973
/gene="TTC6"
/codon_start=2
/product="TTC6 protein"
/protein_id="AAH14342.2"
/db_xref="GeneID:115669"
/translation="DFKQAALISRTNGSLCHATAMCHHRINEFEEAVNFFTWALKINP
CFLDAYVGRGNSYMEYGHDEATKQAQKDFLKALHINPAYIKARISFGYNLQAQGKFQK
AWNHFTIAIDTDPKNYLAYEGRAVVCLQMGNNFAAMQDINAAMKISTTAEFLTNRGVI
HEFMGHKQNAMKDYQDAITLNPKYSLAYFNAGNIYFHHRQFSQASDYFSKALKFDPEN
EYVLMNRAITNTILKKYEEAKEDFANVIESCPFWAAVYFNRAHFYYCLKQYELAEEDL
NKALSLKPNDALVYNFRAKVRGKIGLIEEAMADYNQALDLEDYASVI"
misc_feature 254..718
/gene="TTC6"
/note="PilF; Region: Tfp pilus assembly protein PilF [Cell
motility and secretion / Intracellular trafficking and
secretion]"
/db_xref="CDD:COG3063"
BASE COUNT 400 a 210 c 216 g 340 t
ORIGIN
1 ggattttaaa caagctgcac tgataagccg gactaacggg agcctttgtc acgccactgc
61 catgtgccat cacagaatta atgagtttga agaagctgtc aatttcttta cttgggctct
121 taaaattaac ccatgttttc tggatgctta tgttggacgg ggaaattctt acatggaata
181 cggtcatgat gaagccacca agcaagcaca gaaagacttt ctgaaagcac tgcatattaa
241 tccagcatac ataaaagcca gaattagttt tggctataat ttgcaggccc aaggaaaatt
301 ccagaaagct tggaaccact ttaccattgc catagatact gatccaaaga actacctagc
361 ctatgaagga agagctgtgg tctgtcttca gatgggtaat aattttgctg caatgcagga
421 tattaatgct gccatgaaga tcagtactac agcagaattc ttaacaaatc gtggggtgat
481 tcatgagttt atgggccaca aacagaatgc aatgaaagac taccaagatg caattactct
541 aaaccccaag tactcgctgg cttactttaa tgcaggaaat atctactttc accacaggca
601 gttttcccag gccagtgact acttctcaaa agctttaaaa tttgatccag aaaatgaata
661 tgttctcatg aatcgagcta ttacaaatac aatattaaag aaatatgaag aagcaaaaga
721 agattttgca aatgtaattg aaagctgtcc cttttgggct gcagtatatt ttaatagagc
781 acatttctac tactgcttaa agcaatatga actagctgag gaagacctta ataaagccct
841 gtctttgaag cctaatgatg ctctagtata taattttaga gcaaaagttc gtggtaaaat
901 aggtctgatt gaggaagcta tggctgacta taaccaagca cttgatcttg aagactatgc
961 ctcagttata tgattacata gactgtggtt gctatagtag tttacacagc tgttctctct
1021 gaaacggaaa catatttgtt gtctaaaagg ttctaccatt ttcattattg tattcgttat
1081 gcttagtctt ccatataacc ttctatgcat tttaataaaa tgtttgttat acagtaaaaa
1141 aaaaaaaaaa aaaaaaaaaa aaaaaa
//