LOCUS BC014239 2352 bp mRNA linear HUM 16-SEP-2003 DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, C, mRNA (cDNA clone IMAGE:4565766), partial cds. ACCESSION BC014239 VERSION BC014239.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2352) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2352) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (10-SEP-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC014239.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Louis Staudt cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 30 Row: j Column: 12 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 18641346. FEATURES Location/Qualifiers source 1..2352 /db_xref="H-InvDB:HIT000088335" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4565766" /tissue_type="Primary B-Cells from Tonsils" /clone_lib="NIH_MGC_48" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..>2352 /gene="PTPRC" /gene_synonym="B220" /gene_synonym="CD45" /gene_synonym="GP180" /gene_synonym="LCA" /gene_synonym="LY5" /gene_synonym="T200" /db_xref="GeneID:5788" /db_xref="MIM:151460" CDS 84..>2352 /gene="PTPRC" /gene_synonym="B220" /gene_synonym="CD45" /gene_synonym="GP180" /gene_synonym="LCA" /gene_synonym="LY5" /gene_synonym="T200" /codon_start=1 /product="PTPRC protein" /protein_id="AAH14239.1" /db_xref="GeneID:5788" /db_xref="MIM:151460" /translation="MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPTGLTTAKMPSVPLS SDPLPTHTTAFSPASTFERENDFSETTTSLSPDNTSTQVSPDSLDNASAFNTTGVSSV QTPHLPTHADSQTPSAGTDTQTFSGSAANAKLNPTPGSNAISDAYLNASETTTLSPSG SAVISTTTIATTPSKPTCDEKYANITVDYLYNKETKLFTAKLNVNENVECGNNTCTNN EVHNLTECKNASVSISHNSCTAPDKTLILDVPPGVEKFQLHDCTQVEKADTTICLKWK NIETFTCDTQNITYRFQCGNMIFDNKEIKLENLEPEHEYKCDSEILYNNHKFTNASKI IKTDFGSPGEPQIIFCRSEAAHQGVITWNPPQRSFHNFTLCYIKETEKDCLNLDKNLI KYDLQNLKPYTKYVLSLHAYIIAKVQRNGSAAMCHFTTKSAPPSQVWNMTVSMTSDNS MHVKCRPPRDRNGPHERYHLEVEAGNTLVRNESHKNCDFRVKDLQYSTDYTFKAYFHN GDYPGEPFILHHSTSYNSKALIAFLAFLIIVTSIALLVVLYKIYDLHKKRSCNLDEQQ ELVERDDEKQLMNVEPIHADILLETYKRKIADEGRLFLAEFQSIPRVFSKFPIKEARK PFNQNKNRYVDILPYDYNRVELSEINGDAGSNYINASYIDGFKEPRKYIAAQGPRDET VDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWPSMEEGTRAFGDVVVKINQHKRCP DYIIQKLNIVNKKKKK" misc_feature 1107..1319 /gene="PTPRC" /gene_synonym="B220" /gene_synonym="CD45" /gene_synonym="GP180" /gene_synonym="LCA" /gene_synonym="LY5" /gene_synonym="T200" /note="FN3; Region: Fibronectin type 3 domain" /db_xref="CDD:smart00060" misc_feature 1395..1628 /gene="PTPRC" /gene_synonym="B220" /gene_synonym="CD45" /gene_synonym="GP180" /gene_synonym="LCA" /gene_synonym="LY5" /gene_synonym="T200" /note="fn3; Region: Fibronectin type III domain" /db_xref="CDD:pfam00041" misc_feature 1887..2336 /gene="PTPRC" /gene_synonym="B220" /gene_synonym="CD45" /gene_synonym="GP180" /gene_synonym="LCA" /gene_synonym="LY5" /gene_synonym="T200" /note="PTPc; Region: Protein tyrosine phosphatase, catalytic domain" /db_xref="CDD:smart00194" BASE COUNT 785 a 486 c 444 g 637 t ORIGIN 1 aattgttcct cgtctgataa gacaacagtg gagaaaggac gcatgctgtt tcttagggac 61 acggctgact tccagatatg accatgtatt tgtggcttaa actcttggca tttggctttg 121 cctttctgga cacagaagta tttgtgacag ggcaaagccc aacaccttcc cccactggat 181 tgactacagc aaagatgccc agtgttccac tttcaagtga ccccttacct actcacacca 241 ctgcattctc acccgcaagc acctttgaaa gagaaaatga cttctcagag accacaactt 301 ctcttagtcc agacaatact tccacccaag tatccccgga ctctttggat aatgctagtg 361 cttttaatac cacaggtgtt tcatcagtac agacgcctca ccttcccacg cacgcagact 421 cgcagacgcc ctctgctgga actgacacgc agacattcag cggctccgcc gccaatgcaa 481 aactcaaccc taccccaggc agcaatgcta tctcagatgc ctaccttaat gcctctgaaa 541 caaccactct gagcccttct ggaagcgctg tcatttcaac cacaacaata gctactactc 601 catctaagcc aacatgtgat gaaaaatatg caaacatcac tgtggattac ttatataaca 661 aggaaactaa attatttaca gcaaagctaa atgttaatga gaatgtggaa tgtggaaaca 721 atacttgcac aaacaatgag gtgcataacc ttacagaatg taaaaatgcg tctgtttcca 781 tatctcataa ttcatgtact gctcctgata agacattaat attagatgtg ccaccagggg 841 ttgaaaagtt tcagttacat gattgtacac aagttgaaaa agcagatact actatttgtt 901 taaaatggaa aaatattgaa acctttactt gtgatacaca gaatattacc tacagatttc 961 agtgtggtaa tatgatattt gataataaag aaattaaatt agaaaacctt gaacccgaac 1021 atgagtataa gtgtgactca gaaatactct ataataacca caagtttact aacgcaagta 1081 aaattattaa aacagatttt gggagtccag gagagcctca gattattttt tgtagaagtg 1141 aagctgcaca tcaaggagta attacctgga atccccctca aagatcattt cataatttta 1201 ccctctgtta tataaaagag acagaaaaag attgcctcaa tctggataaa aacctgatca 1261 aatatgattt gcaaaattta aaaccttata cgaaatatgt tttatcatta catgcctaca 1321 tcattgcaaa agtgcaacgt aatggaagtg ctgcaatgtg tcatttcaca actaaaagtg 1381 ctcctccaag ccaggtctgg aacatgactg tctccatgac atcagataat agtatgcatg 1441 tcaagtgtag gcctcccagg gaccgtaatg gcccccatga acgttaccat ttggaagttg 1501 aagctggaaa tactctggtt agaaatgagt cgcataagaa ttgcgatttc cgtgtaaaag 1561 atcttcaata ttcaacagac tacactttta aggcctattt tcacaatgga gactatcctg 1621 gagaaccctt tattttacat cattcaacat cttataattc taaggcactg atagcatttc 1681 tggcatttct gattattgtg acatcaatag ccctgcttgt tgttctctac aaaatctatg 1741 atctacataa gaaaagatcc tgcaatttag atgaacagca ggagcttgtt gaaagggatg 1801 atgaaaaaca actgatgaat gtggagccaa tccatgcaga tattttgttg gaaacttata 1861 agaggaagat tgctgatgaa ggaagacttt ttctggctga atttcagagc atcccgcggg 1921 tgttcagcaa gtttcctata aaggaagctc gaaagccctt taaccagaat aaaaaccgtt 1981 atgttgacat tcttccttat gattataacc gtgttgaact ctctgagata aacggagatg 2041 cagggtcaaa ctacataaat gccagctata ttgatggttt caaagaaccc aggaaataca 2101 ttgctgcaca aggtcccagg gatgaaactg ttgatgattt ctggaggatg atttgggaac 2161 agaaagccac agttattgtc atggtcactc gatgtgaaga aggaaacagg aacaagtgtg 2221 cagaatactg gccgtcaatg gaagagggca ctcgggcttt tggagatgtt gttgtaaaga 2281 tcaaccagca caaaagatgt ccagattaca tcattcagaa attgaacatt gtaaataaaa 2341 aaaaaaaaaa aa //