LOCUS BC014237 1599 bp mRNA linear HUM 23-DEC-2003
DEFINITION Homo sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 30, mRNA (cDNA
clone IMAGE:4553927), complete cds.
ACCESSION BC014237
VERSION BC014237.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1599)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1599)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC014237.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 30 Row: h Column: 22
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1599
/db_xref="H-InvDB:HIT000036593"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4553927"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1599
/gene="DHX30"
/gene_synonym="DDX30"
/gene_synonym="FLJ11214"
/gene_synonym="KIAA0890"
/db_xref="GeneID:22907"
CDS 1..1506
/gene="DHX30"
/gene_synonym="DDX30"
/gene_synonym="FLJ11214"
/gene_synonym="KIAA0890"
/codon_start=1
/product="DHX30 protein"
/protein_id="AAH14237.1"
/db_xref="GeneID:22907"
/translation="MHESKYLILPVHSNIPMMDQKAIFQQPPVGVRKIVLATNIAETS
ITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLF
PRSRLEKMVPFQVPEILRTPLENLVLQAKIHMPEKTAVEFLSKAVDSPNIKAVDEAVI
LLQEIGVLDQREYLTTLGQRLAHISTDPRLAKAIVLAAIFRCLHPLLVVVSCLTRDPF
SSSLQNRAEVDKVKALLSHDSGSDHLAFVRAVAGWEEVLRWQDRSSRENYLEENLLYA
PSLRFIHGLIKQFSENIYEAFLVGKPSDCTLASAQCNEYSEEEELVKGVLMAGLYPNL
IQVRQGKVTRQGKFKPNSVTYRTKSGNILLHKSTINREATRLRSRWLTYFMAVKSNGS
VFVRDSSQVHPLAVLLLTDGDVHIRDDGRRATISLSDSDLLRLEGDSRTVWLLKELRR
ALGRMVERSLRSELAALPPSVQEEHGQLLALLAELLRGPCGSFDVRKTADD"
misc_feature 1..276
/gene="DHX30"
/gene_synonym="DDX30"
/gene_synonym="FLJ11214"
/gene_synonym="KIAA0890"
/note="HELICc; Region: helicase superfamily c-terminal
domain"
/db_xref="CDD:smart00490"
misc_feature 463..747
/gene="DHX30"
/gene_synonym="DDX30"
/gene_synonym="FLJ11214"
/gene_synonym="KIAA0890"
/note="HA2; Region: Helicase associated domain (HA2). This
presumed domain is about 90 amino acid residues in length.
It is found is a diverse set of RNA helicases. Its
function is unknown, however it seems likely to be
involved in nucleic acid binding"
/db_xref="CDD:pfam04408"
BASE COUNT 351 a 459 c 485 g 304 t
ORIGIN
1 atgcacgaga gcaagtacct catcctgcca gtgcactcca acatccccat gatggatcag
61 aaggccatat tccagcagcc tccagttggg gtgcgcaaga ttgtcttggc caccaacatt
121 gctgagactt ccatcacaat caatgacatc gtgcatgtgg tggacagtgg gctgcacaag
181 gaagaacgct atgacctgaa gaccaaggtg tcctgcctgg agacagtgtg ggtatcaaga
241 gccaatgtga tccagcgccg gggccgggcg ggccgctgcc agtccggctt tgcctaccac
301 ttgttccctc gaagccggct ggagaaaatg gtccctttcc aagtgccaga gatcctgcgc
361 acacctcttg agaacctggt gctgcaagcg aaaatccaca tgcctgagaa gacggcggtg
421 gagttcctgt ccaaggctgt ggacagtcca aacatcaagg cagtggacga ggctgtgatc
481 ttgctccagg agatcggggt gctggaccag cgggagtacc tgactaccct ggggcagcgc
541 ctggctcaca tctccaccga cccccggttg gccaaggcca ttgtgttggc tgccatcttc
601 cgttgcctgc acccactact ggtggtcgtt tcctgcctca cccgggaccc cttcagcagc
661 agcctacaga accgggcaga ggtggacaag gtgaaagcac tgttgagcca tgacagcggc
721 agtgaccacc tggcctttgt gcgggctgtc gccggctggg aggaggtgct gcgttggcag
781 gaccgcagct cccgggagaa ttacctggag gaaaacctgc tgtacgcacc cagcctgcgc
841 ttcatccacg gactcatcaa gcagttctca gagaacattt atgaggcctt cctggtgggg
901 aagccctcgg actgcaccct ggcctccgcc cagtgcaacg agtacagtga ggaggaggag
961 ctggtgaagg gcgtgctgat ggccggcctc taccccaacc tcatccaggt gaggcagggc
1021 aaggtcaccc ggcaggggaa gttcaagccc aacagcgtca catataggac caaatcaggc
1081 aacatcctgc tgcacaagtc gaccattaac agggaggcca cacggttacg gagccgatgg
1141 ctgacgtatt tcatggcagt caagtccaat ggcagcgtct tcgtccggga ctcctctcag
1201 gtgcacccgc tagctgtgct gctgctgacc gacggggacg tgcacatccg tgatgacggg
1261 cgccgggcca ccatctcact gagcgacagt gacctgctgc ggctggaggg tgactcgcgt
1321 accgtgtggc tgctgaagga gctgcggcgg gccctgggcc gcatggtgga gcggagcctg
1381 cgcagcgagc tggctgcact tccccccagc gtacaggagg agcacgggca gctgcttgcg
1441 ctactggcag agctgctgcg aggaccctgt ggcagctttg atgtgcgcaa gacagctgac
1501 gactgagccc tgcttctgct ggggctgtgt acagagtgca aatgtttatt taaaataaag
1561 ttctatttat cccttgtgaa aaaaaaaaaa aaaaaaaaa
//