LOCUS BC014062 2242 bp mRNA linear HUM 23-DEC-2003 DEFINITION Homo sapiens DnaJ (Hsp40) homolog, subfamily A, member 3, mRNA (cDNA clone IMAGE:3845144), partial cds. ACCESSION BC014062 VERSION BC014062.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2242) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2242) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (10-SEP-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Dec 19, 2003 this sequence version replaced BC014062.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 28 Row: f Column: 12. FEATURES Location/Qualifiers source 1..2242 /db_xref="H-InvDB:HIT000088269" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:3845144" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_21" /lab_host="DH10B-R" /note="Vector: pOTB7" gene <1..2242 /gene="DNAJA3" /gene_synonym="hTid-1" /gene_synonym="TID1" /db_xref="GeneID:9093" CDS <1..1355 /gene="DNAJA3" /gene_synonym="hTid-1" /gene_synonym="TID1" /codon_start=3 /product="DNAJA3 protein" /protein_id="AAH14062.1" /db_xref="GeneID:9093" /translation="RCSTRWLLVVVGTPRLPAISGRGARPPREGVVGAWLSRKLSVPA FASSLTSCGPRALLTLRPGVSLTGTKHYPFICTASFHTSAPLAKEDYYQILGVPRNAS QKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSAGFD PGASGSQHSYWKGGPTVDPEELFRKIFGEFSSSSFGDFQTVFDQPQEYFMELTFNQAA KGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCG GRGSIIISPCVVCRGAGQAKQKKRVMIPVPAGVEDGQTVRMPVGKREIFITFRVQKSP VFRRDGADIHSDLFISIAQALLGGTARAQGLYETINVTIPPGTQTDQKIRMGGKGIPR INSYGYGDHYIHIKIRVPKRLTSRQQSLILSYAEDETDVEGTVNGVTLTSSGKRSTGN " misc_feature 270..467 /gene="DNAJA3" /gene_synonym="hTid-1" /gene_synonym="TID1" /note="DnaJ; Region: DnaJ domain. DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens are confirmed as DnaJ containing domains from literature" /db_xref="CDD:pfam00226" misc_feature 663..896 /gene="DNAJA3" /gene_synonym="hTid-1" /gene_synonym="TID1" /note="DnaJ_CXXCXGXG; Region: DnaJ central domain (4 repeats). The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found" /db_xref="CDD:pfam00684" misc_feature 912..1277 /gene="DNAJA3" /gene_synonym="hTid-1" /gene_synonym="TID1" /note="DnaJ_C; Region: DnaJ C terminal region. This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress" /db_xref="CDD:pfam01556" BASE COUNT 516 a 605 c 650 g 471 t ORIGIN 1 cgcggtgctc cacacgctgg ttgctggtgg ttgtggggac cccgcggctg ccggctatat 61 cgggtagagg ggcccggccg cccagggagg gcgtggtggg ggcatggctg agccgcaagc 121 tgagcgtccc cgcctttgcg tcttccctga cctcttgcgg cccccgagcg ctgctgacat 181 tgagacctgg tgtcagcctc acaggaacaa aacattaccc tttcatttgt actgcctcct 241 tccacacgag tgcccctttg gccaaagaag attattatca gatattagga gtgcctcgaa 301 atgccagcca gaaagagatc aagaaagcct attatcagct tgccaagaag tatcaccctg 361 acacaaataa ggatgatccc aaagccaagg agaagttctc ccagctggca gaagcctatg 421 aggttttgag tgatgaggtg aagaggaagc agtacgatgc ctacggctct gcaggcttcg 481 atcctggggc cagcggctcc cagcatagct actggaaggg aggccccact gtggaccccg 541 aggagctgtt caggaagatc tttggcgagt tctcatcctc ttcatttgga gatttccaga 601 ccgtgtttga tcagcctcag gaatacttca tggagttgac attcaatcaa gctgcaaagg 661 gggtcaacaa ggagttcacc gtgaacatca tggacacgtg tgagcgctgc aacggcaagg 721 ggaacgagcc cggcaccaag gtgcagcatt gccactactg tggcggctcc ggcatggaaa 781 ccatcaacac aggccctttt gtgatgcgtt ccacgtgtag gagatgtggt ggccgcggct 841 ccatcatcat atcgccctgt gtggtctgca ggggagcagg acaagccaag cagaaaaagc 901 gagtgatgat ccctgtgcct gcaggagtcg aggatggcca gaccgtgagg atgcctgtgg 961 gaaaaaggga aattttcatt acgttcaggg tgcagaaaag ccctgtgttc cggagggacg 1021 gcgcagacat ccactccgac ctctttattt ctatagctca ggctcttctt gggggaacag 1081 ccagagccca gggcctgtac gagacgatca acgtgacgat cccccctggg actcagacag 1141 accagaagat tcggatgggt gggaaaggca tcccccggat taacagctac ggctacggag 1201 accactacat ccacatcaag atacgagttc caaagaggct aacgagccgg cagcagagcc 1261 tgatcctgag ctacgccgag gacgagacag atgtggaggg gacggtgaac ggcgtcaccc 1321 tcaccagctc tggaaaaaga tccactggaa actaggccgg gaagcagcag cccctccaag 1381 ggccagggca cctgggagac gggaggattc cagaacagca gcactgagct cccacccgca 1441 gagcctctgg acggccttgg caacagcaaa atcatgggac aacacctctc tccacggaaa 1501 ggtcacagtg gacagcccgg gcagtaggat gcagccccag aggctggtgg cagtttcctg 1561 tccattggta ggtgacggcc cctggctcag gcagagggag atggttagac tcttgcaggg 1621 ctaaaactct aatttggaat tgaatattgt ggatatctta gttaaaggcc atgcttacag 1681 cttagaaatg aagccttaag ctgcatcaag ttacgaagtg attaatttcc ttctcagcaa 1741 acctccggga ggttccagaa tgagttcttc ctgacaggtt gtcttcactg ggagcgtggg 1801 gcccccaggc cccaccagca ccgtcctccc ctaatgaggg gccctgccga ggcatcagct 1861 gctctgctca gttagttttt attcccgggg taccaagcag ctgcacagtc ggtgcctggg 1921 aggcacgtag aggcccagag agtccctggg ggttctgctc tgaccgtgtg ggtggtgatc 1981 cttgtcagga tgtacagtcc ttgctcccac cccatccagg atggccgcct gtccctgact 2041 attgagtcct gttgttgtaa gccaggcatg gagggctcct gcccttctgc tgagccacag 2101 cccattgcag cactgtgctg gccagacttc agctgccttg ggaactgaag ccctgccact 2161 gttgctagtc aggggcttgg ttctcccact tacactgttg acatctattt tctgaagtgt 2221 gtttaaatta ttcagtgcta at //