LOCUS BC013658 1102 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens collagen, type XX, alpha 1, mRNA (cDNA clone
IMAGE:4153348), partial cds.
ACCESSION BC013658
VERSION BC013658.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1102)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1102)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 19 Row: d Column: 6.
FEATURES Location/Qualifiers
source 1..1102
/db_xref="H-InvDB:HIT000088146"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4153348"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..1102
/gene="COL20A1"
/gene_synonym="bA261N11.4"
/gene_synonym="KIAA1510"
/db_xref="GeneID:57642"
CDS <1..838
/gene="COL20A1"
/gene_synonym="bA261N11.4"
/gene_synonym="KIAA1510"
/codon_start=2
/product="COL20A1 protein"
/protein_id="AAH13658.1"
/db_xref="GeneID:57642"
/translation="LAKARGPRSSSAAFQLQMLQIVCSDTWADEDRCCELPASRDGET
CPAFVSACSCSSETPGPPGPQGPPGLPGRNGTPGEQGFPGPRGPPGVKGEKGDHGLPG
LQGHPGHQGIPGRVGLQGPKGMRGLEGTAGLPGPPGPRGFQGMAGARGTSGERGPPGT
VGPTGLPGPKGERGEKGEPQSLATLYQLVSQACESAIQTHVSKFDSFHENTRPPMPIL
EQKLEPGTEPLGSPGTRSKALVPGEWGRGGRHLEGRGEPGAVGQMGSPGQQGASTQGL
WE"
BASE COUNT 256 a 331 c 359 g 156 t
ORIGIN
1 gctggccaag gccaggggcc cccggagcag ttcggccgcg tttcagctcc agatgctgca
61 gatcgtgtgc agtgacacct gggccgatga ggaccggtgc tgtgagctcc ctgcctcgag
121 ggatggagag acctgccccg ccttcgtgtc tgcctgttcc tgttcctcag agacccctgg
181 gcccccagga cctcaaggac ccccaggcct ccctgggagg aatggcaccc caggagagca
241 gggcttccca gggcccaggg gtccaccagg ggtcaaagga gagaagggag accatgggct
301 tccaggcttg cagggccacc ccggccacca gggcatcccc gggagagttg gcctccaggg
361 accaaaggga atgagaggcc tggagggaac tgctggcctg cctggacccc ctggccccag
421 ggggttccag ggcatggcag gggccagggg cactagtgga gagcgaggac ctccagggac
481 cgtggggccc acaggactgc cagggcccaa aggggaacga ggagagaagg gcgagccgca
541 gtcccttgcc accctctacc agcttgtgag ccaggcctgt gagtctgcca ttcagacaca
601 cgtgtcaaag ttcgactcct tccacgagaa caccaggccc cccatgccca tcttggagca
661 gaagctggag ccgggcactg agcccctggg gtcccctggc acccgcagca aggccctggt
721 tcctggagaa tgggggcgtg gtggccgcca ccttgagggc agaggggagc ctggagctgt
781 tggtcagatg ggcagccctg ggcagcaggg ggctagcacc cagggcctct gggagtgaca
841 ggacattttc tgcactgccc cgaggaacgc tgagccttcc tccctgggtt tgtctggaca
901 ccgagagcga ccacatcctg gagaagccag gagaaaagct caggaagagc ctgcaggtgg
961 aaggagaggg aagcagcggc ctcggccaag gcccacccca tactcttggc tctgtagcat
1021 ttccaagttc agataaaccc ctgagtgctc acccaaaaaa aaaaaaaaaa aaaaaaaaaa
1081 aaaaaaaaaa aaaaaaaaaa aa
//