LOCUS BC013609 3440 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens cadherin 11, type 2, OB-cadherin (osteoblast), mRNA
(cDNA clone MGC:17193 IMAGE:4183901), complete cds.
ACCESSION BC013609
VERSION BC013609.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3440)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3440)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: l Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 16306531.
FEATURES Location/Qualifiers
source 1..3440
/db_xref="H-InvDB:HIT000036303"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17193 IMAGE:4183901"
/tissue_type="Brain, glioblastoma with EGFR amplification"
/clone_lib="NCI_CGAP_Brn64"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3440
/gene="CDH11"
/gene_synonym="CAD11"
/gene_synonym="CDHOB"
/gene_synonym="OB"
/gene_synonym="OSF-4"
/db_xref="GeneID:1009"
/db_xref="HGNC:HGNC:1750"
/db_xref="MIM:600023"
CDS 175..2565
/gene="CDH11"
/gene_synonym="CAD11"
/gene_synonym="CDHOB"
/gene_synonym="OB"
/gene_synonym="OSF-4"
/codon_start=1
/product="cadherin 11, type 2, OB-cadherin (osteoblast)"
/protein_id="AAH13609.1"
/db_xref="GeneID:1009"
/db_xref="HGNC:HGNC:1750"
/db_xref="MIM:600023"
/translation="MKENYCLQAALVCLGMLCHSHAFAPERRGHLRPSFHGHHEKGKE
GQVLQRSKRGWVWNQFFVIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFV
IDDKSGNIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFL
HETYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIR
TALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVMITLTDVNDNPPKFPQSVYQMS
VSEAAVPGEEVGRVKAKDPDIGENGLVTYNIVDGDGMESFEITTDYETQEGVIKLKKP
VDFETKRAYSLKVEAANVHIDPKFISNGPFKDTVTVKIAVEDADEPPMFLAPSYIHEV
QENAAAGTVVGRVHAKDPDAANSPIRYSIDRHTDLDRFFTINPEDGFIKTTKPLDREE
TAWLNITVFAAEIHNRHQEAKVPVAIRVLDVNDNAPKFAAPYEGFICESDQTKPLSNQ
PIVTISADDKDDTANGPRFIFSLPPEIIHNPNFTVRDNRDNTAGVYARRGGFSRQKQD
LYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGALLSCNAEAYILNAGLSTGALIAIL
ACIVILLVIVVLFVTLRRQKKEPLIVFEEEDVRENIITYDDEGGGEEDTEAFDIATLQ
NPDGINGFIPRKDIKPEYQYMPRPGLRPAPNSVDVDDFINTRIQEADNDPTAPPYDSI
QIYGYEGRGSVAGSLSSLESATTDSDLDYDYLQNWGPRFKKLADLYGSKDTFDDDS"
BASE COUNT 1055 a 774 c 792 g 819 t
ORIGIN
1 agaagctaac tggggacgtg ggcagccctg acgtgatgag ctcaaccagc agagacattc
61 catcccaaga gaggtctgcg tgacgcgtcc gggaggccac cctcagcaag accaccgtac
121 agttggtgga aggggtgaca gctgcattct cctgtgccta ccacgtaacc aaaaatgaag
181 gagaactact gtttacaagc cgccctggtg tgcctgggca tgctgtgcca cagccatgcc
241 tttgccccag agcggcgggg gcacctgcgg ccctccttcc atgggcacca tgagaagggc
301 aaggaggggc aggtgctaca gcgctccaag cgtggctggg tctggaacca gttcttcgtg
361 atagaggagt acaccgggcc tgaccccgtg cttgtgggca ggcttcattc agatattgac
421 tctggtgatg ggaacattaa atacattctc tcaggggaag gagctggaac catttttgtg
481 attgatgaca aatcagggaa cattcatgcc accaagacgt tggatcgaga agagagagcc
541 cagtacacgt tgatggctca ggcggtggac agggacacca atcggccact ggagccaccg
601 tcggaattca ttgtcaaggt ccaggacatt aatgacaacc ctccggagtt cctgcacgag
661 acctatcatg ccaacgtgcc tgagaggtcc aatgtgggaa cgtcagtaat ccaggtgaca
721 gcttcagatg cagatgaccc cacttatgga aatagcgcca agttagtgta cagtatcctc
781 gaaggacaac cctatttttc ggtggaagca cagacaggta tcatcagaac agccctaccc
841 aacatggaca gggaggccaa ggaggagtac cacgtggtga tccaggccaa ggacatgggt
901 ggacatatgg gcggactctc agggacaacc aaagtgatga tcacactgac cgatgtcaat
961 gacaacccac caaagtttcc gcagagcgta taccagatgt ctgtgtcaga agcagccgtc
1021 cctggggagg aagtaggaag agtgaaagct aaagatccag acattggaga aaatggctta
1081 gtcacataca atattgttga tggagatggt atggaatcat ttgaaatcac aacggactat
1141 gaaacacagg agggggtgat aaagctgaaa aagcctgtag attttgaaac caaaagagcc
1201 tatagcttga aggtagaggc agccaacgtg cacatcgacc cgaagtttat cagcaatggc
1261 cctttcaagg acactgtgac cgtcaagatc gcagtagaag atgctgatga gccccctatg
1321 ttcttggccc caagttacat ccacgaagtc caagaaaatg cagctgctgg caccgtggtt
1381 gggagagtgc atgccaaaga ccctgatgct gccaacagcc cgataaggta ttccatcgat
1441 cgtcacactg acctcgacag atttttcact attaatccag aggatggttt tattaaaact
1501 acaaaacctc tggatagaga ggaaacagcc tggctcaaca tcactgtctt tgcagcagaa
1561 atccacaatc ggcatcagga agccaaagtc ccagtggcca ttagggtcct tgatgtcaac
1621 gataatgctc ccaagtttgc tgccccttat gaaggtttca tctgtgagag tgatcagacc
1681 aagccacttt ccaaccagcc aattgttaca attagtgcag atgacaagga tgacacggcc
1741 aatggaccaa gatttatctt cagcctaccc cctgaaatca ttcacaatcc aaatttcaca
1801 gtcagagaca accgagataa cacagcaggc gtgtacgccc ggcgtggagg gttcagtcgg
1861 cagaagcagg acttgtacct tctgcccata gtgatcagcg atggcggcat cccgcccatg
1921 agtagcacca acaccctcac catcaaagtc tgcgggtgcg acgtgaacgg ggcactgctc
1981 tcctgcaacg cagaggccta cattctgaac gccggcctga gcacaggcgc cctgatcgcc
2041 atcctcgcct gcatcgtcat tctcctggtc attgtagtat tgtttgtgac cctgagaagg
2101 caaaagaaag aaccactcat tgtctttgag gaagaagatg tccgtgagaa catcattact
2161 tatgatgatg aagggggtgg ggaagaagac acagaagcct ttgatattgc caccctccag
2221 aatcctgatg gtatcaatgg atttatcccc cgcaaagaca tcaaacctga gtatcagtac
2281 atgcctagac ctgggctccg gccagcgccc aacagcgtgg atgtcgatga cttcatcaac
2341 acgagaatac aggaggcaga caatgacccc acggctcctc cttatgactc cattcaaatc
2401 tacggttatg aaggcagggg ctcagtggcc gggtccctga gctccctaga gtcggccacc
2461 acagattcag acttggacta tgattatcta cagaactggg gacctcgttt taagaaacta
2521 gcagatttgt atggttccaa agacactttt gatgacgatt cttaacaata acgatacaaa
2581 tttggcctta agaactgtgt ctggcgttct caagaatcta gaagatgtgt aaacaggtat
2641 ttttttaaat caaggaaagg ctcatttaaa acaggcaaag ttttacagag aggatacatt
2701 taataaaact gcgaggacat caaagtggta aatactgtga aatacctttt ctcacaaaaa
2761 ggcaaatatt gaagttgttt atcaacttcg ctagaaaaaa aaaacacttg gcatacaaaa
2821 tatttaagtg aaggagaagt ctaacgctga actgacaatg aagggaaatt gtttatgtgt
2881 tatgaacatc caagtctttc ttctttttta agttgtcaaa gaagcttcca caaaattaga
2941 aaggacaaca gttctgagct gtaatttcgc cttaaactct ggacactcta tatgtagtgc
3001 atttttaaac ttgaaatata taatattcag ccagcttaaa cccatacaat gtatgtacaa
3061 tacaatgtac aattatgtct cttgagcatc aatcttgtta ctgctgattc ttgtaaatct
3121 ttttgcttct actttcatct taaactaata cgtgccagat ataactgtct tgtttcagtg
3181 agagacgccc tatttctatg tcatttttaa tgtatctatt tgtacaattt taaagttctt
3241 attttagtat acatataaat atcagtattc tgacatgtaa gaaaatgtta cggcatcaca
3301 cttatatttt atgaacattg tactgttgct ttaatatgag cttcaatata agaagcaatc
3361 tttgaaataa aaaaagattt ttttttaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3421 aaaaaaaaaa aaaaaaaaaa
//