LOCUS BC013582 2479 bp mRNA linear HUM 03-JAN-2005
DEFINITION Homo sapiens Fanconi anemia, complementation group D2, mRNA (cDNA
clone IMAGE:3876190), complete cds.
ACCESSION BC013582
VERSION BC013582.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2479)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2479)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (04-SEP-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC013582.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 14 Row: a Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21361860
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2479
/db_xref="H-InvDB:HIT000050578"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3876190"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_68"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2479
/gene="FANCD2"
/gene_synonym="FA-D2"
/gene_synonym="FA4"
/gene_synonym="FACD"
/gene_synonym="FAD"
/gene_synonym="FAD2"
/gene_synonym="FANCD"
/db_xref="GeneID:2177"
/db_xref="MIM:227646"
CDS 52..777
/gene="FANCD2"
/gene_synonym="FA-D2"
/gene_synonym="FA4"
/gene_synonym="FACD"
/gene_synonym="FAD"
/gene_synonym="FAD2"
/gene_synonym="FANCD"
/codon_start=1
/product="FANCD2 protein"
/protein_id="AAH13582.1"
/db_xref="GeneID:2177"
/db_xref="MIM:227646"
/translation="MVSKRRLSKSEDKESLTEDASKTRKQPLSKKTKKSHIANEVEEN
DSIFVKLLKISGIILKTGESQNQLAVDQIAFQKKLFQTLRRHPSYPKIIEEFVSGLES
YIEDEDSFRNCLLSCERLQDEEASMGASYSKSLIKLLLGIDILQPAIIKTLFEKLPEY
FFENKNSDEINIPRLIVSQLKWLDRVVDGKDLTTKIMQLISIAPENLQHDIITSLPEI
LGDSQHADVGKELRWINPLSSSK"
BASE COUNT 687 a 516 c 535 g 741 t
ORIGIN
1 ggcggcgacg gcttctcgga agtaatttaa gtgcacaaga cattggtcaa aatggtttcc
61 aaaagaagac tgtcaaaatc tgaggataaa gagagcctga cagaagatgc ctccaaaacc
121 aggaagcaac cactttccaa aaagacaaag aaatctcata ttgctaatga agttgaagaa
181 aatgacagca tctttgtaaa gcttcttaag atatcaggaa ttattcttaa aacgggagag
241 agtcagaatc aactagctgt ggatcaaata gctttccaaa agaagctctt tcagaccctg
301 aggagacacc cttcctatcc caaaataata gaagaatttg ttagtggcct ggagtcttac
361 attgaggatg aagacagttt caggaactgc cttttgtctt gtgagcgtct gcaggatgag
421 gaagccagta tgggtgcatc ttattctaag agtctcatca aactgcttct ggggattgac
481 atactgcagc ctgccattat caaaacctta tttgagaagt tgccagaata tttttttgaa
541 aacaagaaca gtgatgaaat caacatacct cgactcattg tcagtcaact aaaatggctt
601 gacagagttg tggatggcaa ggacctcacc accaagatca tgcagctgat cagtattgct
661 ccagagaacc tgcagcatga catcatcacc agcctacctg agatcctagg ggattcccag
721 cacgctgatg tggggaaaga actcaggtgg ataaaccctc tgtcatcatc taagtgaggc
781 tcagctatgg gggttctatc actgcagtat gcaaagagca gtagtaatat ggtctcttct
841 atctaaaaag aggatgatac cccccttcat gagtagggta tgggatttga cttaaaaaaa
901 aaaggtatat atttgaatag atccacatac tttctttttt tttttttttt ttttctggga
961 cagtcttgct ctgtcgccca ggctggagtg cagtggtgcg atctcagctc actgcaacct
1021 ccgcctcctg ggttcacccc attctcctgc ctcagcctcc caagtagctg ggactggggg
1081 cgcctgctac catgcccgac taattttttt ggtattttta gtagagacgg ggtttcacca
1141 tgttagccag gatggtctcg atctcctgac cttgtgatcc gccctcctcg gcctcccaga
1201 gtgctgggat tacaggcatg agccaccgtg cctggcccca tgtactttct tttaaatggt
1261 atacctgtta tgagcgtgaa gtctggctta ggattagata tctaaatttg gccagtggag
1321 aagttgacca tgatccctta agtttcatta acttgttctt cagggggtcc ttaaccctgg
1381 ctgcacatta aaatcatttg tggagcctat taaacatcta ccttctttgg gttcctaggt
1441 gattcattct aatgcacagt cctgcatcag accgcttgcg gagacccatt gcttactgtc
1501 attcatttga aaaatagtaa ttggtaggga agtattgaag aaggggagaa caatatccct
1561 aggtaataaa gtttccatct taatgcaact ttttattgta ctagaagtat tttttttaaa
1621 ttcagtttgt aatacttcct tttgtatagt tgtctgcaaa gctacctcca aaacatccag
1681 tgatttcttg ccctcatcct tttgggcagg atgctccttc tgggcaaagt actacgccat
1741 ccactttacc tgcctgatgc cagctcatct ccttttgtat agtctttttt tttttttagc
1801 atctgtcacc gtctgttggg cgcagtggct catgccttta atcccagcat gttgggcggc
1861 tgaagtgggt gggtcacttg agcccaggag tttgagacca gcctggacaa catggtgaaa
1921 agccgtcttt caaaaacata caaaaattag gtgggcgtgg tggtacgcac ttatggttct
1981 agctactcag gaggctgaga tgggaggatc aattgagcgt ggaaggtcga ggctgcagtg
2041 ggctgtgatg acaccactgt aactgtactc aagcctgggc atcagagtaa gaccctgtct
2101 caaaaaacaa acaaacaaaa aaaaaagcaa tctatcactg tccttctcac tatgttgtgc
2161 tcctgtagca ccacctacat gtgtctctca tacttatcag atttcattgt aaatgttttg
2221 ggttttcttt ttcctttttg cggggaagga tacataccaa actaaatagt ggtgttctct
2281 gggtagtggg gattgtgatg gaaggcttct tgtttctact tttattattt gaatttttat
2341 aatgagcatg tattattttt tgcagtcaaa acaattttta aagaaacata ctataaacgg
2401 taacttaatg gcaactaagt atgtccttta ttttcatact ctaataaatg attttctcaa
2461 gtcaaaaaaa aaaaaaaaa
//