LOCUS BC013414 3764 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tripartite motif-containing 9, mRNA (cDNA clone
MGC:4626 IMAGE:3510374), complete cds.
ACCESSION BC013414
VERSION BC013414.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3764)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3764)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC013414.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 11 Row: a Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46370050.
FEATURES Location/Qualifiers
source 1..3764
/db_xref="H-InvDB:HIT000036260"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4626 IMAGE:3510374"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3764
/gene="TRIM9"
/gene_synonym="KIAA0282"
/gene_synonym="RNF91"
/gene_synonym="SPRING"
/db_xref="GeneID:114088"
/db_xref="HGNC:HGNC:16288"
/db_xref="MIM:606555"
CDS 138..1790
/gene="TRIM9"
/gene_synonym="KIAA0282"
/gene_synonym="RNF91"
/gene_synonym="SPRING"
/codon_start=1
/product="tripartite motif-containing 9"
/protein_id="AAH13414.1"
/db_xref="GeneID:114088"
/db_xref="HGNC:HGNC:16288"
/db_xref="MIM:606555"
/translation="MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPES
ESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVF
PPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQ
SKAAALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVS
RRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQ
LSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRRKAQL
LARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRR
VHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQVKASSPVPATPILQLEE
CCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNST
YNARVKAFNKTGVSPYSKTLVLQTSEGKALQQYPSERELRGI"
BASE COUNT 976 a 994 c 911 g 883 t
ORIGIN
1 gccagtgctg cgcgggaagg caccaccacc acagccgccg ccgctggcca gggtgctgga
61 caagacgggc ccgtcggcca cctcgccagc tcaggcaccc gctgcagccg tcgctgtctc
121 ctcccagacc ggtccccatg gaggagatgg aagaggagtt gaaatgcccc gtgtgcggct
181 ccttctatcg ggagcccatc atcctgccct gctctcacaa tttgtgtcag gcgtgcgccc
241 gcaacatcct ggtgcagacc ccagagtctg aatcccccca gagccatcgg gccgcgggct
301 ccggggtctc cgactatgac tatctggacc tggacaagat gagcctatac agcgaggcgg
361 acagcggcta tggctcctac ggggggttcg ccagcgcccc cactaccccg tgccagaagt
421 cccccaacgg cgtccgcgtg tttcccccgg ctatgccgcc accggccacc cacttgtcac
481 cggccctggc cccggtgccc cgcaactcct gtatcacctg cccccagtgt caccgcagcc
541 tcatcctgga tgaccggggg ctccgcggct tccccaagaa tcgcgtactg gaaggggtaa
601 ttgaccgcta ccagcagagc aaagccgcgg ccctcaagtg ccagctctgc gagaaggcgc
661 ccaaggaagc caccgtcatg tgcgaacagt gcgatgtctt ctactgcgat ccgtgccgcc
721 tgcgctgcca cccgccccgg gggcccctag ccaagcaccg cctggtgccc ccggcccagg
781 gtcgtgtgag ccggaggctg agcccacgca aggtctccac ctgcacagac cacgagctgg
841 agaaccacag catgtactgc gtgcaatgca agatgcccgt gtgctaccag tgcttggagg
901 agggcaaaca ctccagccac gaagtcaagg ctctgggggc catgtggaaa ctacataaga
961 gccagctctc ccaggcgctg aacggactgt cagacagggc caaagaagcc aaggagtttc
1021 tggtacagct gcgcaacatg gtccagcaga tccaggagaa cagtgtggag tttgaagcct
1081 gtctggtggc ccaatgtgat gccctcatcg atgccctcaa cagaagaaaa gcccagctgc
1141 tggcccgcgt caacaaggag catgagcaca agctgaaggt ggttcgagat cagatctctc
1201 actgcacagt gaaattgcgc cagaccacag gtctcatgga gtactgcttg gaggtgatta
1261 aggaaaatga tcctagtggt tttttgcaga tttctgacgc cctcataaga agagtgcacc
1321 tgactgagga tcagtggggt aaaggcacac tcactccaag gatgaccacg gactttgact
1381 tgagtctgga caacagccct ctgctgcaat ccatccacca gctggatttc gtgcaagtga
1441 aagcttcctc tccagtccca gcaaccccta tcctacagct ggaggaatgt tgtacccaca
1501 acaacagcgc tacgttgtcc tggaaacagc cacctctgtc cacggtgccc gccgatggat
1561 acattctgga gctggatgat ggcaacggtg gtcaattccg ggaggtgtat gtggggaagg
1621 agacaatgtg cactgtggat ggtcttcact tcaacagcac atacaacgct cgggtcaagg
1681 ccttcaacaa aacaggagtc agcccgtaca gcaagaccct ggtcctccaa acgtctgagg
1741 gtaaggccct tcagcagtat ccctcagagc gagaactgcg tggcatctaa agtggctggc
1801 aagcccggag gtaaccccac cactgcccac attcctgaag tgtttccatg acttgctctg
1861 cattctgcac agagccgctg ttcctctcct gcctttagag agcctatggt atgtggatgt
1921 gatcaaacca aagattccac atcggcagtt ccaatggctt gggccggcgg cttcctttga
1981 taacaatcta aataagctgc agttgaagaa gctgaaaaat gaaggcctga atgtgcccct
2041 ggtgtgtaag acaaatgtat ctaggctcta gagcaggctc ccattctcca ccgatacaca
2101 tcatgtgcca gttttgccca gatgattcta aattactctg tagtacttgc ttgttctgag
2161 ggtgggacct aggttctttc cagtcgtgga tttgtatgac tgaatgtgtt tcaaatgggt
2221 ggtggggtgc tagagctgtt tagagagggc ctgttggctg ctcctggctt acccacttag
2281 actgcctccg tttcataccc aaagcggagg ccgtcagcac caggattgag acttcctgtg
2341 ggcaccaaac aggaagagac cagcaacttc gcattacccg ccattttcat ctttgccagt
2401 cccttcagtc ttggctaggc taccgagagc caccatacaa ggttcatctc tagagaattt
2461 ttgcttctta gctatacttt aaatattttg gtcatcaaag acaagtaatg tgtctcagat
2521 gagaggctga atttgatggc cagatataac ctctgaggct tttaacattt tcattttaag
2581 agtaagcaag acacatgaaa ttaaacctac aaggaggtat ttgtggctgg tgccaaagca
2641 ttctgacact ttggggtgtc attttaatca aagaaatcac ccccccacct caccgggatt
2701 ctccataact tccctctgca gaactaatta tgttgatttt gttcaagttc aagatgttag
2761 ctaaaagaac tatggtggtg ttttttttcc cacttcccac aaacctcaac atgtgccagt
2821 caccctaaaa tgcttcacat ggttaaaaac aagcacaatt ttgaatccta cagcaaggat
2881 gaaaggcccc tagccgtgaa aacagtgctt tggggagcag ttgtcagtct aagtgatgct
2941 attccaagag aaggatatgc tgagggaaaa tgcccacatg acctgttccc atttggagta
3001 cagtgatgtg gtagctacag cttcccccag aattatcatt ttagcacctt ctctcaggga
3061 tgacctatca gtttgagagc agttgcctct tttctcaaaa taccatacta actgctaaag
3121 ccctccaaga gtctttccta gatgcaacgc agaaggccct tgctggtgat ggcctcattt
3181 cccatgtgtg tacaaggtgg tttgattgaa gagtgaagtg catgcctgca gagcagagag
3241 aaatttgtag caatgttgct aatatgtgtt atcagatctg cgggaaaact atttctattc
3301 ataatacatc atgggaatca tactattctg gtaaaaatca gttattagca taacagcctg
3361 agcacttatg tctctcgttt catcctgcag gaggatgtag cgcctcagtt tattttaatg
3421 ttcataagat tatggtgtct aatttaataa attacaggat tggaactgcg atccttggta
3481 ccacagtcac agaactgggg gtcattttct agatgaaaca aacggaacaa gttctcttcc
3541 aacaaagaaa ctgtactgta gaaattaatt tcctccatga attttatata ttgtgtacaa
3601 atataaggta tgtatctgaa tacaaagaaa agcctatcat catatagata tcagtattct
3661 ctgttactgc acagaagtaa ttttctcatg atgaaataaa gttcacacac atactttctc
3721 caaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//