LOCUS BC013404 1297 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tetraspanin 1, mRNA (cDNA clone MGC:4439
IMAGE:2959379), complete cds.
ACCESSION BC013404
VERSION BC013404.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1297)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1297)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC013404.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 10 Row: m Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21264577.
FEATURES Location/Qualifiers
source 1..1297
/db_xref="H-InvDB:HIT000036253"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:4439 IMAGE:2959379"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_15"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1297
/gene="TSPAN1"
/gene_synonym="9030418M05Rik"
/gene_synonym="NET-1"
/gene_synonym="RP11-322N21.1"
/gene_synonym="TSPAN-1"
/db_xref="GeneID:10103"
/db_xref="HGNC:HGNC:20657"
CDS 126..851
/gene="TSPAN1"
/gene_synonym="9030418M05Rik"
/gene_synonym="NET-1"
/gene_synonym="RP11-322N21.1"
/gene_synonym="TSPAN-1"
/codon_start=1
/product="tetraspanin 1"
/protein_id="AAH13404.1"
/db_xref="GeneID:10103"
/db_xref="HGNC:HGNC:20657"
/translation="MQCFSFIKTMMILFNLLIFLCGAALLAVGIWVSIDGASFLKIFG
PLSSSAMQFVNVGYFLIAAGVVVFALGFLGCYGAKTESKCALVTFFFILLLIFIAEVA
AAVVALVYTTMAEHFLTLLVVPAIKKDYGSQEDFTQVWNTTMKGLKCCGFTNYTDFED
SPYFKENSAFPPFCCNDNVTNTANETCTKQKAHDQKVEGCFNQLLYDIRTNAVTVGGV
AAGIGGLELAAMIVSMYLYCNLQ"
BASE COUNT 297 a 335 c 331 g 334 t
ORIGIN
1 gagagccagg cgtccctctg cctgcccact cagtggcaac acccgggagc tgttttgtcc
61 tttgtggagc ctcagcagtt ccctctttca gaactcactg ccaagagccc tgaacaggag
121 ccaccatgca gtgcttcagc ttcattaaga ccatgatgat cctcttcaat ttgctcatct
181 ttctgtgtgg tgcagccctg ttggcagtgg gcatctgggt gtcaatcgat ggggcatcct
241 ttctgaagat cttcgggcca ctgtcgtcca gtgccatgca gtttgtcaac gtgggctact
301 tcctcatcgc agccggcgtt gtggtctttg ctcttggttt cctgggctgc tatggtgcta
361 agactgagag caagtgtgcc ctcgtgacgt tcttcttcat cctcctcctc atcttcattg
421 ctgaggttgc agctgctgtg gtcgccttgg tgtacaccac aatggctgag cacttcctga
481 cgttgctggt agtgcctgcc atcaagaaag attatggttc ccaggaagac ttcactcaag
541 tgtggaacac caccatgaaa gggctcaagt gctgtggctt caccaactat acggattttg
601 aggactcacc ctacttcaaa gagaacagtg cctttccccc attctgttgc aatgacaacg
661 tcaccaacac agccaatgaa acctgcacca agcaaaaggc tcacgaccaa aaagtagagg
721 gttgcttcaa tcagcttttg tatgacatcc gaactaatgc agtcaccgtg ggtggtgtgg
781 cagctggaat tgggggcctc gagctggctg ccatgattgt gtccatgtat ctgtactgca
841 atctacaata agtccacttc tgcctctgcc actactgctg ccacatggga actgtgaaga
901 ggcaccctgg caagcagcag tgattggggg aggggacagg atctaacaat gtcacttggg
961 ccagaatgga cctgcccttt ctgctccaga cttggggcta gatagggacc actcctttta
1021 ggcgatgcct gactttcctt ccattggtgg gtggatgggt ggggggcatt ccagagcctc
1081 taaggtagcc agttctgttg cccattcccc cagtctatta aacccttgat atgcccccta
1141 ggcctagtgg tgatcccagt gctctactgg gggatgagag aaaggcattt tatagcctgg
1201 gcataagtga aatcagcaga gcctctgggt ggatgtgtag aaggcacttc aaaatgcata
1261 aacctgttac aatgttaaaa aaaaaaaaaa aaaaaaa
//