LOCUS BC013199 2177 bp mRNA linear HUM 16-DEC-2006
DEFINITION Homo sapiens NLR family member X1, mRNA (cDNA clone IMAGE:4387619),
partial cds.
ACCESSION BC013199
VERSION BC013199.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2177)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2177)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: p Column: 19.
FEATURES Location/Qualifiers
source 1..2177
/db_xref="H-InvDB:HIT000036177"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4387619"
/tissue_type="Bone, osteosarcoma"
/clone_lib="NIH_MGC_86"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2177
/gene="NLRX1"
/gene_synonym="CLR11.3"
/gene_synonym="FLJ21478"
/gene_synonym="MGC21025"
/gene_synonym="NOD9"
/db_xref="GeneID:79671"
/db_xref="HGNC:HGNC:29890"
CDS <1..2127
/gene="NLRX1"
/gene_synonym="CLR11.3"
/gene_synonym="FLJ21478"
/gene_synonym="MGC21025"
/gene_synonym="NOD9"
/codon_start=1
/product="NLRX1 protein"
/protein_id="AAH13199.3"
/db_xref="GeneID:79671"
/db_xref="HGNC:HGNC:29890"
/translation="QLVAQRYTPLKEVLPLMAAAGSHLLFVLHGLEHLNLDFRLAGTG
LCSDPEEPQEPAAIIVNLLRKYMLPQASILVTTRPSAIGRIPSKYVGRYGEICGFSDT
NLQKLYFQLRLNQPYCGYAVGGSGVSATPAQRDHLVQMLSRNLEGHHQIAAACFLPSY
CWLVCATLHFLHAPTPAGQTLTSIYTSFLRLNFSGETLDSTDPSNLSLMAYAARTMGK
LAYEGVSSRKTYFSEEDVCGCLEAGIRTEEEFQLLHIFRRDALRFFLAPCVEPGRAGT
FVFTVPAMQEYLAALYIVLGLRKTTLQKVGKEVAELVGRVGEDVSLVLGIMAKLLPLR
ALPLLFNLIKVVPRVFGRMVGKSREAVAQAMVLEMFREEDYYNDDVLDQMGASILGVE
GPRRHPDEPPEDEVFELFPMFMGGLLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLG
KLGRQVLPPSELLDHLFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLG
SGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQC
QITTLRLSNNPLTEAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL
QELNVAYNGAGDTAALALARAAREHPSLELLQGVAIQMCWKLPLLPYAHLWTPRMPSH
WCFLLILMPPLPQWYDGLVAPRGRCT"
BASE COUNT 401 a 682 c 632 g 462 t
ORIGIN
1 caacttgtgg cccagcgcta cacgcccctg aaggaggttc tgcccctgat ggctgctgct
61 gggtcccacc tcctctttgt gctccatggc ttagagcatc tcaacctcga cttccggctg
121 gcaggcacgg gactttgtag tgacccggag gaaccgcagg aaccagctgc tatcatcgtc
181 aacctgctgc gcaaatacat gctgcctcag gccagcattc tggtgaccac tcggccctct
241 gccattggcc gtatccccag caagtacgtg ggccgctatg gtgagatctg cggtttctct
301 gataccaacc tgcagaagct ctacttccag ctccgcctca accagccgta ctgcgggtat
361 gccgttggcg gttcaggtgt ctctgccaca ccagctcagc gtgaccacct ggtgcagatg
421 ctctcccgga acctggaggg gcaccaccag atagccgctg cctgcttcct gccgtcctat
481 tgctggctcg tttgtgccac cttgcacttc ctgcatgccc ccacgcctgc tgggcagacc
541 cttacaagca tctataccag cttcctgcgc ctcaacttca gcggggaaac cctggacagc
601 actgacccct ccaatttgtc cctgatggcc tatgcagccc gaaccatggg caagttggcc
661 tatgaggggg tgtcctcccg caagacctac ttctctgaag aggatgtctg tggctgcctg
721 gaggctggca tcaggacgga ggaggagttt cagctgctgc acatcttccg tcgggatgcc
781 ctgaggtttt tcctggcccc atgtgtggag ccagggcgtg caggcacctt cgtgttcacc
841 gtgcccgcca tgcaggaata cctggctgcc ctctacattg tgctgggttt gcgcaagacg
901 accctgcaaa aggtgggcaa ggaagtggct gagctcgtgg gccgtgttgg ggaggacgtc
961 agcctggtac tgggcatcat ggccaagctg ctgcctctgc gggctctgcc tctgctcttc
1021 aacctgatca aggtggttcc acgagtgttt gggcgcatgg tgggtaaaag ccgggaggcg
1081 gtggctcagg ccatggtgct ggagatgttt cgagaggagg actactacaa cgatgatgtt
1141 ctggaccaga tgggcgccag tatcctgggc gtggagggcc cccggcgcca cccagatgag
1201 ccccctgagg atgaagtctt cgagctcttc cccatgttca tgggggggct tctctctgcc
1261 cacaaccgag ctgtgctagc tcagcttggc tgccccatca agaacctgga tgccctggag
1321 aatgcccagg ccatcaagaa gaagctgggc aagctgggcc ggcaggtgct gcccccatca
1381 gagctccttg accacctctt cttccactat gagttccaga accagcgctt ctccgctgag
1441 gtgctcagct ccctgcgtca gctcaacctg gcaggtgtgc gcatgacacc agtcaagtgc
1501 acagtggtgg cagctgtgct gggcagcgga aggcatgccc tggatgaggt gaacttggcc
1561 tcctgccagc tagatcctgc tgggctgcgc acactcctgc ctgtcttcct gcgtgcccgg
1621 aagctgggct tgcaactcaa cagcctgggc cctgaggcct gcaaggacct ccgagacctg
1681 ttgctgcatg accagtgcca aattaccaca ctgcggctgt ccaacaaccc gctgacggag
1741 gcaggtgttg ccgtgctaat ggaggggctg gcaggaaaca cctcagtgac gcacctgtcc
1801 ctgctgcaca cgggccttgg ggacgaaggc ctggagctgc tggctgccca gctggaccgc
1861 aaccggcagc tgcaggagct gaacgtggcg tacaacggtg ctggtgacac agcggccctg
1921 gccctggcca gagctgcccg ggagcaccct tccctggaac tgctacaggg tgtcgccatc
1981 cagatgtgtt ggaagcttcc cctcctgcct tatgctcacc tgtggacacc gaggatgccc
2041 tcacattggt gctttctcct catcctcatg ccccctttgc cacaatggta tgatggcttg
2101 gtagcccctc gaggcagatg cacctgactt gctgctatta aaaagccgtg tgccttctac
2161 caaaaaaaaa aaaaaaa
//