LOCUS BC013183 2055 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens major histocompatibility complex, class II, DO alpha, mRNA (cDNA clone MGC:17214 IMAGE:4340975), complete cds. ACCESSION BC013183 VERSION BC013183.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2055) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2055) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 26 Row: i Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 62912477. FEATURES Location/Qualifiers source 1..2055 /db_xref="H-InvDB:HIT000036168_03" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:17214 IMAGE:4340975" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_85" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2055 /gene="HLA-DOA" /gene_synonym="HLADZ" /db_xref="GeneID:3111" /db_xref="HGNC:HGNC:4936" /db_xref="MIM:142930" CDS 25..777 /gene="HLA-DOA" /gene_synonym="HLADZ" /codon_start=1 /product="major histocompatibility complex, class II, DO alpha" /protein_id="AAH13183.1" /db_xref="GeneID:3111" /db_xref="HGNC:HGNC:4936" /db_xref="MIM:142930" /translation="MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGA SGQFTHEFDEEQLFSVDLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVER SNRSRAINVPPRVTVLPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQ TSFYSQPDHLFRKFHYLPFVPSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMET LVCALGLAIGLVGFLVGTVLIIMGTYVSSVPR" BASE COUNT 467 a 563 c 534 g 491 t ORIGIN 1 atttgattaa agcaccagag tgtaatggcc ctcagagcag ggctggtcct ggggttccac 61 accctgatga ccctcctgag cccgcaggag gcaggggcca ccaaggctga ccacatgggc 121 tcctacggac ccgccttcta ccagtcttac ggcgcctcgg gccagttcac ccatgaattt 181 gatgaggaac agctgttctc tgtggacctg aagaaaagcg aggccgtgtg gcgtctgcct 241 gagtttggcg actttgcccg ctttgacccg cagggcgggc tggccggcat cgccgcaatc 301 aaagcccatc tggacatcct ggtggagcgc tccaaccgca gcagagccat caacgtgcct 361 ccacgggtga ccgtgctccc caaatctcgg gtggagctgg gccagcccaa catcctcatc 421 tgcatcgtgg acaacatctt cccccctgtg atcaatatca cctggctgcg caacggccaa 481 actgtcactg agggagtggc ccagaccagc ttctattccc agcctgacca tttgttccgc 541 aagttccact acctgccctt cgtgccctca gccgaggacg tctatgactg ccaggtggag 601 cactggggcc tggatgcgcc actcctcagg cattgggagc tccaggtgcc tattccacca 661 ccagatgcca tggagaccct ggtctgtgcc ctgggcctgg ccatcggcct ggtgggcttc 721 ctcgtgggca ccgtcctcat catcatgggc acatatgtgt ccagtgtccc caggtaatga 781 tccttctgag agaaatgact tgtgggagac accctgcaga tcctcatggg tttgtgacag 841 cccctgcgtg ctcagtgccc tttaagtgca tcccgctgtg ctgactttga gtgggatcaa 901 catctgtcct acgggtcccc tcttttttgg ccccagtatt catggcaggg tttgttggac 961 acctactagc ttcccttccc attcaacaca cacacacatt cttgctctac ccaaagctct 1021 ggctggcagc actaaatgct ttggtggtgt ttgcactgtg tcctttccag gccttggcca 1081 gttcttccag gggtgaggca tgtggtgctg gggattggca gccatcctgg ggcccacaca 1141 ggtgtgtctt gctccatttg gcccattgtg tgttactttg tgaatgagcc atttcacatg 1201 gacttcatga aatttgcctc ctgagttcag gtttaccctg aaagggatgc agattatcct 1261 gttcctcacg accccctcag ctaacaacag ttctgaaggg tgctgggaca ggacaggctc 1321 atggggactc cactcctgcc tgggtttact ctgtatgaag aggccactgg tatcctgcca 1381 tgatgttatc tcctttttct acttttccct agagtcccat gcatgataaa gagaggccca 1441 aggcttggat aaggtggcca cttccctcag tggagtcagt catgttaggt aggaggtggt 1501 agagtcggtc tgcgaggtat ctcgtaagag gggaggtcca cctagacaca ctctaaatat 1561 gtggcctaga agattttggt ctacttttct gtgaacagaa tttaaaacat acaaagagat 1621 aaatcaccat accacatagt ttatgtcagg accaaaatga gcaatacaga ttacggtttt 1681 caaaccagaa tgcacataag aactgcttgg gatcctttta aaagtacagg cattggcctg 1741 gtgcagtggc tcattcctgt aatcccagca ctttgggagg ccaaggggac aggactgctt 1801 gaggccaaga ggtggaaacc atcttgggct acatagagag accccatctc tacaaagaaa 1861 gatttaaaaa ttaaccagcc atggtggctc gcacctgtat tcccagccac tggggaggct 1921 gaggccggag gagtgcttga gcccaggagt tcaaggctgc agtgagccaa gattgcgcca 1981 ctgcactcca gcctaggtga cagagtgaga ccctgtctct aaataaataa ataaataaat 2041 aaaaaaaaaa aaaaa //