LOCUS BC013130 2123 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ceroid-lipofuscinosis, neuronal 6, late infantile,
variant, mRNA (cDNA clone MGC:21605 IMAGE:4517748), complete cds.
ACCESSION BC013130
VERSION BC013130.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2123)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2123)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 28 Row: i Column: 24.
FEATURES Location/Qualifiers
source 1..2123
/db_xref="H-InvDB:HIT000036139"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21605 IMAGE:4517748"
/tissue_type="Bladder, transitional cell papilloma"
/clone_lib="NIH_MGC_93"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2123
/gene="CLN6"
/gene_synonym="FLJ20561"
/gene_synonym="HsT18960"
/db_xref="GeneID:54982"
/db_xref="HGNC:HGNC:2077"
/db_xref="MIM:606725"
CDS 10..945
/gene="CLN6"
/gene_synonym="FLJ20561"
/gene_synonym="HsT18960"
/codon_start=1
/product="ceroid-lipofuscinosis, neuronal 6, late
infantile, variant"
/protein_id="AAH13130.1"
/db_xref="GeneID:54982"
/db_xref="HGNC:HGNC:2077"
/db_xref="MIM:606725"
/translation="MEATRRRQHLGATGGPGAQLGASFLQARHGSVSADEAARTAPFH
LDLWFYFTLQNWVLDFGRPIAMLVFPLEWFPLNKPSVGDYFHMAYNVITPFLLLKLIE
RSPRTLPRSITYVSIIIFIMGASIHLVGDSVNHRLLFSGYQHHLSVRENPIIKNLKPE
TLIDSFELLYYYDEYLGHCMWYIPFFLILFMYFSGCFTASKAESLIPGPALLLVAPSG
LYYWYLVTEGQIFILFIFTFFAMLALVLHQKRKRLFLDSNGLFLFSSFALTLLLVALW
VAWLWNDPVLRKKYPGVIYVPEPWAFYTLHVSSRH"
BASE COUNT 399 a 651 c 585 g 488 t
ORIGIN
1 ggggcagcca tggaggcgac gcggaggcgg cagcacctgg gagcgacggg cggcccaggc
61 gcgcagctgg gcgcctcctt cctgcaggcc aggcatggct ctgtgagcgc tgatgaggct
121 gcccgcacgg ctcccttcca cctcgacctc tggttctact tcacactgca gaactgggtt
181 ctggactttg ggcgtcccat tgccatgctg gtattccctc tcgagtggtt tccactcaac
241 aagcccagtg ttggggacta cttccacatg gcctacaacg tcatcacgcc ctttctcttg
301 ctcaagctca tcgagcggtc cccccgcacc ctgccacgct ccatcacgta cgtgagcatc
361 atcatcttca tcatgggtgc cagcatccac ctggtgggtg actctgtcaa ccaccgcctg
421 ctcttcagtg gctaccagca ccacctgtct gtccgtgaga accccatcat caagaatctc
481 aagccggaga cgctgatcga ctcctttgag ctgctctact attatgatga gtacctgggt
541 cactgcatgt ggtacatccc cttcttcctc atcctcttca tgtacttcag cggctgcttt
601 actgcctcta aagctgagag cttgattcca gggcctgccc tgctcctggt ggcacccagt
661 ggcctgtact actggtacct ggtcaccgag ggccagatct tcatcctctt catcttcacc
721 ttcttcgcca tgctggccct cgtcctgcac cagaagcgca agcgcctctt cctggacagc
781 aacggcctct tcctcttctc ctccttcgca ctgaccctct tgcttgtggc gctctgggtc
841 gcctggctgt ggaatgaccc tgttctcagg aagaagtacc cgggtgtcat ctacgtccct
901 gagccctggg ctttctacac ccttcacgtc agcagtcggc actgagtccc tggcaccagg
961 ctctggcgct ctgctgggtg ggagggtggg ccatggaggg catctgaata caggagtagg
1021 gggggtgtgg gtgtgtaacc agagaccgag agcatgagtg gggtgtgcct cgtgtgcgtg
1081 gattcgtgtg tgtgtgtgtg tcttgtatat gtgtgcgcag agtgcatcat tttcagactc
1141 tactatttcc gtcaagtttc tgtttgattt ggatcatctc aggatcggat tctgttttag
1201 agtgtttctg ggccaggatc cgggcccctg ccctcctctg cacctgacca cactccctac
1261 tcagggctag tctgttcttc ccggacatct tctggtagcc gtgcaggaga gggctgggtg
1321 gggcagaggc caggagggga cctggtgtgt cacctgccca ccacctggct catccctcag
1381 gcccaccctg accctacatt acataggtta cgtcagccta ctgtggctgt tgagcaaagc
1441 atttctcctt tctgggcctc atttgcacta gatgggcctg tggtcccaaa gtaggtcagt
1501 aggttggggt tgctgacacc ccttgggtgc agctttggga cagatgagtg gctctgtcct
1561 gtcactgccc tctccctgcc tgggggctat gtgcactcca gacccctgcc caggctcagg
1621 cccatgaggt atggagacac cctggccccc aggagctgga ggcaccgccc actcccctgg
1681 cattccagct ttgcaggtga ccctcctcta cccaaagctc tgtccccctg ctcccactcc
1741 agaagaactg cggcacgtgc ttcgggcagc ctagccacag gctttgagcg cctgcattcc
1801 tgggggctgg agggtggggt gccaaaggcc ctgagcaaaa gccagagctc ctctcatcaa
1861 agcctttaca aggtgctggg cccagaggct ttgccttgac agagtggccc agggtttcaa
1921 gggaggagga acctccccct acctaggacc cttcctgtgg ggggtctaca gagtcaggga
1981 cagaagggaa gggacccaca ggaagtcaca gtggtgccca gggatgtgtc agcccccagc
2041 cacggggacg cgggattcaa gaatgaagta aatacagtca cagccccaaa aaaaaaaaaa
2101 aaaaaaaaaa aaaaaaaaaa aaa
//