LOCUS BC013116 2230 bp mRNA linear HUM 12-JAN-2007
DEFINITION Homo sapiens CAP-GLY domain containing linker protein 3, mRNA (cDNA
clone MGC:21836 IMAGE:4214441), complete cds.
ACCESSION BC013116
VERSION BC013116.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2230)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2230)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 26 Row: h Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18496982.
FEATURES Location/Qualifiers
source 1..2230
/db_xref="H-InvDB:HIT000036131"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21836 IMAGE:4214441"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2230
/gene="CLIP3"
/gene_synonym="CLIPR-59"
/gene_synonym="CLIPR59"
/gene_synonym="DKFZp586N1922"
/gene_synonym="RSNL1"
/db_xref="GeneID:25999"
/db_xref="HGNC:HGNC:24314"
/db_xref="MIM:607382"
CDS 143..1786
/gene="CLIP3"
/gene_synonym="CLIPR-59"
/gene_synonym="CLIPR59"
/gene_synonym="DKFZp586N1922"
/gene_synonym="RSNL1"
/codon_start=1
/product="CAP-GLY domain containing linker protein 3"
/protein_id="AAH13116.2"
/db_xref="GeneID:25999"
/db_xref="HGNC:HGNC:24314"
/db_xref="MIM:607382"
/translation="MTKTDPAPMAPPPRGEEEEEEEEDEPVPEAPSPTQERRQKPVVH
PSAPAPLPKDYAFTFFDPNDPACQEILFDPQTTIPELFAIVRQWVPQVQHKIDVIGNE
ILRRGCHVNDRDGLTDMTLLHYACKAGAHGVGDPAAAVRLSQQLLALGADVTLRSRWT
NMNALHYAAYFDVPVLVRVLLKGARPRVVNSTCSDFNHGSALHIAASSLCLGAAKCLL
EHGANPALRNRKGQVPAEVVPDPMDMSLDKAEAALVAKELRTLLEEAVPLSCALPKVT
LPNYDNVPGNLMLSALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGK
NDGSVGGVRYFICPPKQGLFASVSKISKAVDAPPSSVTSTPRTPRMDFSRVTGKGRRE
HKGKKKTPSSPSLGSLQQRDGAKAEVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIEL
DQPTGKHDGSVFGVRYFTCPPRHGVFAPASRIQRIGGSTDSPGDSVGAKKVHQVTMTQ
PKRTFTTVRTPKDIASENSISRLLFCCWFPWMLRAEMQS"
BASE COUNT 502 a 735 c 592 g 401 t
ORIGIN
1 ccatcacgtc ccctgacacc gacaccccat tgctcccaca gtctccccag tctccacttt
61 ggtccccagc gctgtctgcc cgaggatttg cctgaaggct gcccccaact ctgcacccgc
121 cccccgaggg ccaccgagga ccatgactaa gacagatcct gccccgatgg ccccgccacc
181 ccgaggagag gaggaagaag aggaggagga ggatgaaccc gtccccgagg cccccagccc
241 cacccaggag cgccggcaga agcctgttgt gcacccctcg gcacctgccc ccctccctaa
301 ggactacgct ttcaccttct tcgatcccaa tgacccggcg tgccaggaga tcctgtttga
361 ccctcagacc accatccccg agctgtttgc cattgtgcgc cagtgggtgc cccaagtcca
421 gcacaagata gacgtcatcg gcaatgagat tctgcgccga ggctgccatg tgaacgatcg
481 tgacgggctg accgacatga cactgctcca ctatgcgtgc aaagctgggg cccacggagt
541 cggggacccc gcggcagccg tgcgcctctc gcagcagctg ctggcgctgg gcgcagatgt
601 gacgctgcgc agccgctgga ccaacatgaa cgcgcttcac tacgcggcct attttgatgt
661 gcccgtcctc gtgcgtgtgc tgctgaaggg tgcgaggccg cgagtggtga actccacgtg
721 cagtgacttc aaccacggct cagccctgca catcgctgct tccagcctgt gcctgggcgc
781 cgccaaatgt ttgctggagc acggcgccaa ccctgcgctg aggaatcgaa aaggacaggt
841 gccggcggag gtggtcccag atcctatgga catgtccctg gacaaggcag aggcggcact
901 ggtggccaag gagctgcgga cgcttctgga agaggcagtg ccactatctt gcgccctccc
961 caaggtcacg ctacccaact atgacaacgt cccaggcaat ctcatgctta gcgcactggg
1021 cttgcgcctg ggagaccgcg tgctgctgga tggccagaag acgggcacac tgcggttctg
1081 tgggaccacg gagtttgcca gcggccagtg ggtgggcgtg gagctggacg aacctgaggg
1141 caagaacgat ggcagcgttg ggggcgttcg gtacttcatc tgccctccca agcagggtct
1201 ctttgcctcc gtgtccaaga tctccaaggc agtggacgca cccccctcct ctgtcacctc
1261 cacaccccgg accccccgga tggacttctc ccgtgtcacc ggcaaaggcc gcagggaaca
1321 caaaggcaag aagaagaccc catcatcccc atctctgggc agcttgcagc agcgtgacgg
1381 ggccaaggct gaggttggag accaggtcct tgtcgcgggc cagaagcagg ggatcgtgcg
1441 cttctacggg aagacagact ttgccccagg ttactggtat ggcattgagc tggaccagcc
1501 cacaggcaag catgatggct ctgtcttcgg tgtccggtac ttcacttgcc ccccgaggca
1561 tggggtcttc gcaccagcat cccgtattca gaggattggc ggatccactg attcccccgg
1621 ggacagcgtt ggagccaaaa aagtgcatca agtgacaatg acgcagccca aacgcacctt
1681 caccacagtc cggaccccaa aggacattgc atcagagaac tccatttcca ggttgctgtt
1741 ctgctgctgg ttcccctgga tgctgagggc ggagatgcag tcttagaggc cctggacacc
1801 tgacaaagag acagagtccc cactagcatc tcctgacacc cgaggagccc tgagtcaccc
1861 tgagatagag attcccagta acacatccag agtagagacc cctgttagcc agccctcgat
1921 cattgaggcc ccattattaa cagatactcc cataataacc cccaaataca gaccccatgt
1981 cacccagaaa gagattccct gagtagcacc ttcaggctag tccctatccc caacccctca
2041 gagcagattc ccagattaac agatttccat atcaccccaa atgatggtga ccctctccac
2101 ataatgcatt acaacagaac attcttgaat cacccaaccc tggatcagaa acctccccat
2161 taacaaacac tgccccttaa gtcctcttga aataaacata ggtcacaccc ccaaagcaaa
2221 aaaaaaaaaa
//