LOCUS BC013101 1607 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens leucine rich repeat containing 42, mRNA (cDNA clone MGC:8974 IMAGE:3918785), complete cds. ACCESSION BC013101 VERSION BC013101.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1607) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1607) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (27-AUG-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 26 Row: b Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 31543202. FEATURES Location/Qualifiers source 1..1607 /db_xref="H-InvDB:HIT000036120" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:8974 IMAGE:3918785" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_72" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1607 /gene="LRRC42" /gene_synonym="dJ167A19.4" /gene_synonym="MGC8974" /db_xref="GeneID:115353" /db_xref="HGNC:HGNC:28792" CDS 78..1364 /gene="LRRC42" /gene_synonym="dJ167A19.4" /gene_synonym="MGC8974" /codon_start=1 /product="leucine rich repeat containing 42" /protein_id="AAH13101.1" /db_xref="GeneID:115353" /db_xref="HGNC:HGNC:28792" /translation="MSYYLSSENHLDPGPIYMRENGQLHMVNLALDGVRSSLQKPRPF RLFPKGFSVELCMNREDDTARKEKTDHFIFTYTREGNLRYSAKSLFSLVLGFISDNVD HIDSLIGFPEQIAEKLFSAAEARQKFTEPGAGLRALQKFTEAYGSLVLCSLCLRNRYL VISEKLEEIKSFRELTCLDLSCCKLGDEHELLEHLTNEALSSVTQLHLKDNCLSDAGV RKMTAPVRVMKRGLENLTLLDLSCNPEITDAGIGYLFSFRKLNCLDISGTGLKDIKTV KHKLQTHIGLVHSKVPLKEFDHSNCKTEGWADQIVLQWERVTAEAVKPRETSEPRAAA QRFYGKRSRAEAPLKCPLADTHMNSSEKLQFYKEKAPDCHGPVLKHEAISSQESKKSK KRPFEESETEQNNSSQPSKQKYVCLAVEDWDLLNSY" BASE COUNT 446 a 359 c 398 g 404 t ORIGIN 1 ggccgcggga ggagggagcc gtcaccgagg agctgccgct cgctgccccg ggcaggggca 61 cagttgcaac caaggcaatg tcttactacc tcagctcaga aaaccacctg gacccagggc 121 ccatctacat gcgagaaaat gggcagctgc acatggtcaa tctggctctg gatggtgtca 181 ggagtagcct gcagaagcca aggcctttca gactgttccc caaaggcttt tctgtggagc 241 tttgcatgaa cagggaagac gacactgcac ggaaagagaa gactgatcat ttcatcttca 301 catacacccg agaggggaat cttcggtact ccgccaaatc cctcttcagc cttgtcctgg 361 gtttcatctc cgacaatgtg gatcacattg attcccttat tggctttcct gagcagattg 421 ctgaaaagct gttctctgct gctgaagcca gacagaaatt cactgagcca ggtgcagggc 481 tgagggcttt acagaaattc actgaggcct atggaagttt ggtgctttgc tccctgtgtt 541 tgcgaaacag gtatctcgtg atttcagaaa agcttgagga gattaagtct ttccgggagc 601 tgacctgcct ggatctttcc tgttgcaagc ttggagatga gcatgaactt ctagaacatc 661 tcaccaatga agccctgtct agtgtaactc agctccacct gaaggataat tgtttatctg 721 atgctggggt gcggaagatg acagcaccag ttcgagtgat gaaaagaggc cttgagaatc 781 taacattatt agacttatca tgtaaccctg agatcacaga tgcaggcatt ggatacctct 841 tttcttttag gaaactaaac tgcttagata tctctgggac agggctcaag gacatcaaaa 901 ccgtcaagca caagctccag acccacatag gccttgttca ctccaaagtg cctttgaagg 961 aatttgatca tagtaactgc aagacagagg gctgggctga ccagatcgtt ctgcagtggg 1021 agcgtgtgac tgcggaagct gtgaagccac gggagacctc ggagcctaga gcagcagctc 1081 agcgcttcta tgggaagcgg tctcgagcag aagccccact gaagtgtccc ctggcagaca 1141 cccacatgaa ctcttccgag aaactccagt tctataaaga gaaagcccca gattgccatg 1201 ggccagtgtt gaaacacgaa gctatctcaa gccaggagtc aaagaagagc aagaagagac 1261 cttttgagga gtcagagaca gaacagaata actcttcaca accttcaaag cagaaatatg 1321 tatgtcttgc tgtggaagac tgggacttgt taaattccta ttgattagta gatacaagtt 1381 gacctttctc tggcccccag ctctagtgtt tgagtaaagg agactgagga tgatttactt 1441 tttgtttgaa tttacctatg gcattagcat agtaagcaga tatttctact tttgtggtgt 1501 gggaggggaa tgctatggaa gtatgtaata atttctaatg tatattttca atacatagta 1561 attttttcaa ataaacattt ttgctgtcct taaaaaaaaa aaaaaaa //