LOCUS BC012977 2364 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) small phosphatase 1, mRNA (cDNA clone MGC:15065
IMAGE:3687816), complete cds.
ACCESSION BC012977
VERSION BC012977.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2364)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2364)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 9, 2003 this sequence version replaced BC012977.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 24 Row: a Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 32813442.
FEATURES Location/Qualifiers
source 1..2364
/db_xref="H-InvDB:HIT000036057"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15065 IMAGE:3687816"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2364
/gene="CTDSP1"
/gene_synonym="NLIIF"
/gene_synonym="SCP1"
/db_xref="GeneID:58190"
/db_xref="HGNC:HGNC:21614"
/db_xref="MIM:605323"
CDS 46..831
/gene="CTDSP1"
/gene_synonym="NLIIF"
/gene_synonym="SCP1"
/codon_start=1
/product="CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) small phosphatase 1"
/protein_id="AAH12977.1"
/db_xref="GeneID:58190"
/db_xref="HGNC:HGNC:21614"
/db_xref="MIM:605323"
/translation="MDSSAVITQISKEEARGPLRGKGDQKSAASQKPRSRGILHSLFC
CVCRDDGEALPAHSGAPLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLV
HSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYAD
PVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDN
AVPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVLRQPRPGS"
BASE COUNT 446 a 741 c 682 g 495 t
ORIGIN
1 ggcgcccggg ccagagtccg gccggagcgg agcgcgcccg gccccatgga cagctcggcc
61 gtcattactc agatcagcaa ggaggaggct cggggcccgc tgcggggcaa aggtgaccag
121 aagtcagcag cttcccagaa gccccgaagc cggggcatcc tccactcact cttctgctgt
181 gtctgccggg atgatgggga ggccctgcct gctcacagcg gggcgcccct gcttgtggag
241 gagaatggag ccatccctaa gcagacccca gtccaatacc tgctccctga ggccaaggcc
301 caggactcag acaagatctg cgtggtcatc gacctggacg agaccctggt gcacagctcc
361 ttcaagccag tgaacaacgc ggacttcatc atccctgtgg agattgatgg ggtggtccac
421 caggtctacg tgttgaagcg tcctcacgtg gatgagttcc tgcagcgaat gggcgagctc
481 tttgaatgtg tgctgttcac tgctagcctc gccaagtacg cagacccagt agctgacctg
541 ctggacaaat ggggggcctt ccgggcccgg ctgtttcgag agtcctgcgt cttccaccgg
601 gggaactacg tgaaggacct gagccggttg ggtcgagacc tgcggcgggt gctcatcctg
661 gacaattcac ctgcctccta tgtcttccat ccagacaatg ctgtaccggt ggcctcgtgg
721 tttgacaaca tgagtgacac agagctccac gacctcctcc ccttcttcga gcaactcagc
781 cgtgtggacg acgtgtactc agtgctcagg cagccacggc cagggagcta gtgagggtga
841 tggggccagg acctgcccct gaccaatgat acccacacct cctcccagga agactgccca
901 ggcctttgtt aggaaaaccc atgggccgcc gccacactca gtgccatggg gaagcgggcg
961 tctcccccac cagccccacc aggcggtgta ggggcagcag gctgcactga ggaccgtgag
1021 ctccaggccc cgtgtcagtg ccttcaaacc tcctccccta ttctcagggg acctgggggg
1081 ccctgcctgc tgctcccttt ttctgtctct gtccatgctg ccatgtttct ctgctgccaa
1141 attgggcccc ttggcccctt ccggttctgc ttcctggggg cagggttcct gccttggacc
1201 cccagtctgg gaacggtgga catcaagtgc cttgcataga gccccctctt ccccgcccag
1261 ctttcccagg ggcacagctc taggctggga ggggagaacc agcccctccc cctgccccac
1321 ctcctccctt gggactgaga gggcccctac caacctttgc ctctgccttg gagggagggg
1381 aggtctgtta ccactgggga aggcagcagg agtctgtcct tcaggcccca cagtgcagct
1441 tctccagggc cgacagctga gggctgctcc ctgcatcatc caagcaatga cctcagactt
1501 ctgccttaac cagccccggg gcttggctcc cccagctctg agcgtggggg cataggcagg
1561 accccccttg tggtgccata taaatatgta catgtgtata tagattttta ggggaaggag
1621 agagggaagg gtcagggtag agacacccct cccttgcccc tttcctgggc ccagaagttg
1681 gggggaggga gggaaaggat ttttacattt tttaaactgc tattttctga atggaacaag
1741 ctgggccaag gggcccaggc cctgtcctct gtccctcaca cccctttgct ccgttcattc
1801 attcaaaaaa acatttcttg agcaccttct gtgcccagca tatgctaggc ccaccagcta
1861 agtgtgtgtg gggggtctct acgccagctc atcagtgcct ccttgcccat ccttcaccgg
1921 tgcctttggg ggatctgtag gaggtgggac cttctgtggg gtttggggat ctccaggaag
1981 cccgaccaag ctgtcccctt cccctgtgcc aacccatctc ctacagcccc ctgcctgatc
2041 ccctgctggc tgggggcagc tcccaggata tcctgccttc caactgtttc tgaagcccct
2101 cctcctaaca tggcgattcc ggaggtcaag gccttgggct ctccccaggg tctaacggtt
2161 aaggggaccc acataccagt gccaaggggg atgtcaagtg gtgatgtcgt tgtgctcccc
2221 tcccccagag cgggtgggcg gggggtgaat atggttggcc tgcatcaggt ggccttccca
2281 tttaagtgcc ttctctgtga ctgagagccc tagtgtgatg agaactaaag agaaagccag
2341 acccctaaaa aaaaaaaaaa aaaa
//