LOCUS BC012906 2563 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens nucleoporin 98kDa, mRNA (cDNA clone IMAGE:3881182),
partial cds.
ACCESSION BC012906
VERSION BC012906.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2563)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2563)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: n Column: 14.
FEATURES Location/Qualifiers
source 1..2563
/db_xref="H-InvDB:HIT000036026"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3881182"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_68"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2563
/gene="NUP98"
/gene_synonym="ADIR2"
/gene_synonym="NUP196"
/gene_synonym="NUP96"
/db_xref="GeneID:4928"
/db_xref="HGNC:HGNC:8068"
/db_xref="MIM:601021"
CDS <1..2260
/gene="NUP98"
/gene_synonym="ADIR2"
/gene_synonym="NUP196"
/gene_synonym="NUP96"
/codon_start=2
/product="NUP98 protein"
/protein_id="AAH12906.2"
/db_xref="GeneID:4928"
/db_xref="HGNC:HGNC:8068"
/db_xref="MIM:601021"
/translation="LEESMPEDQEPVSASTHIASSLGINPHVLQIMKASLLTDEEDVD
MALDQRFSRLPSKADTSQEICSPRLPISASHSSKTRSLVGGLLQSKFTSGAFLSPSVS
VQECRTPRAASLMNIPSTSSCLTESPFKVHLEKLSLRQRKPDEDMKLYQTPLELKLKH
STVHVDELCPLIVPNLGVAVIHDYADWVKEASGDLPEAQIVKHWSLTWTLCEALWGHL
KELDSQLNEPREYIQILERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGK
RISEACSLAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQADSFIQDERLRIF
ALLAGKPVWQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTS
DSDRYACSPLPSYLEGSGCVIAEEQNSQTPLRDVCFHLLKLYSDRHYDLNQLLEPRSI
TADPLDYRLSWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHID
NSGIREKAVRELLTRHCQLLETPESWAKETFLTQKLRVPAKWIHEAKAVRAHMESDKH
LEALCLFKAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETS
GLVYLDYIRVIEMLRHIQQVDCSGNDLEQLHIKVTSLCSRIEQIQCYSAKDRLAQSDM
AKRVANLLRVVLSLHHPPDRTSDSTPDPQRVPLRLLAPHIGRLPMPEDYAMDELRSLT
QSYLRELAVGSL"
BASE COUNT 672 a 672 c 585 g 634 t
ORIGIN
1 gttagaagag agcatgcctg aggatcagga acctgtgtct gcctcaacac atattgcatc
61 ttcactggga attaatccac atgtcttaca gatcatgaaa gcatcattgc ttactgatga
121 agaagatgta gatatggcac tggatcaacg cttcagtcgc ctgccttcca aagcagatac
181 ttctcaagaa atctgttctc ccagactccc catttcagca tcccactcgt cgaaaactcg
241 ttcactagtt ggtgggttac tacaatcaaa atttacaagt ggagcttttc tttcaccaag
301 tgtctctgtg caagaatgtc gtactcccag agcagcatct ttaatgaata tcccatccac
361 atcctcttgc ctaactgagt ccccattcaa agttcactta gaaaaactca gtttgagaca
421 aagaaagcca gatgaagaca tgaaattata tcagacacct ctggagctca aattaaaaca
481 cagcactgtc catgtggatg aactgtgtcc tctcattgtc cccaatctgg gagttgctgt
541 cattcatgac tatgcagatt gggttaaaga agcatcagga gacttaccag aagcacaaat
601 tgtgaagcac tggagcctga catggacact atgtgaagcc ctatggggcc acctgaagga
661 gcttgacagc cagctaaatg aaccccgtga atacattcaa attctggagc gaagaagagc
721 tttctcccgc tggctatcct gtactgccac acctcagatt gaagaggaag tctccttaac
781 ccaaaaaaac agccctgtgg aggctgtatt cagctacctc acaggcaaaa ggatcagtga
841 ggcctgctct ctggcccagc agtcagggga tcatcgtctt gctcttcttt tatctcagtt
901 tgtgggtagc cagtcagtcc gggagctgct caccatgcag ttggtggact ggcatcagct
961 ccaagcagac tccttcatcc aggatgagag actgcgcatc tttgctctgt tggctggaaa
1021 accggtgtgg cagctctcag aaaagaagca aataaacgtg tgctcccagt tggattggaa
1081 acgctccctg gctatccatc tttggtattt gcttccacca acagcctcca tttctagggc
1141 gctcagcatg tatgaagaag catttcagaa tacctctgac agtgacagat atgcctgctc
1201 cccacttcct tcgtatctgg agggttctgg ctgtgtgata gcggaggagc aaaactcaca
1261 gacaccactt cgagatgtct gctttcacct tctaaaactc tacagtgaca gacattatga
1321 tctcaaccag ctgctggagc ctcgaagcat aacagcagat cctttggact accgcctaag
1381 ctggcacttg tgggaagtgc tgagggctct taactacacc catctctcag cgcagtgtga
1441 aggtgtgcta caggccagtt acgctggcca gcttgaaagt gaggggctct gggagtgggc
1501 catctttgtc ctcctgcaca ttgacaactc aggcatacgt gagaaggctg ttcgagagct
1561 gcttacccgg cactgccagc tgttggagac ccctgaatct tgggctaaag agactttcct
1621 tacccagaag ctccgtgtac ctgccaaatg gatccacgag gccaaagctg tgcgagcaca
1681 catggaatct gacaagcact tagaggccct ttgcttattt aaggctgagc actggaaccg
1741 ctgccacaag ctcatcatcc gacacttagc ttctgatgcc atcattaatg agaactatga
1801 ctacctgaag gggttcttgg aagacctggc acctccagag cgcagcagcc taattcagga
1861 ttgggaaaca tctgggcttg tttacctgga ctatattaga gtcattgaaa tgctccgcca
1921 tatacagcag gtggattgct caggtaatga cctggagcag ttacacatca aagtgacttc
1981 actgtgcagt cggatagagc agattcagtg ttacagtgct aaagatcgcc tggctcagtc
2041 agacatggcc aaacgtgtag ccaacctgct gcgcgtggtg ctgagtctgc atcatcctcc
2101 tgatagaacc tccgactcaa caccagaccc tcagcgagtc cctttgcgcc tcttggctcc
2161 ccacattggc cggcttccca tgcctgagga ctatgccatg gacgaactgc gcagccttac
2221 ccagtcctat ctgcgagaac tggctgttgg gagcctgtga gccccaggca ctttgcatca
2281 cagtcacatg cccattcaca ccacacagag gttccctgcc ttgtttggat tggcactgtt
2341 tgccattctc tgggttggct gtggcatcta ccctccctcc ctgctgccag aagcagcatc
2401 ctccacttgt tcagggcttt tcttaatact gaacgtagca taagggcttc tggaacccag
2461 aagaggagac agtttaccat cctcaagatc attcagtgtt tttcctttaa aaaaatggtc
2521 aataaagctc ctttggcaga aaaaaaaaaa aaaaaaaaaa aaa
//