LOCUS BC012806 2866 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens solute carrier family 5 (sodium-dependent vitamin
transporter), member 6, mRNA (cDNA clone MGC:3286 IMAGE:3507776),
complete cds.
ACCESSION BC012806
VERSION BC012806.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2866)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2866)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC012806.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: o Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 10863878.
FEATURES Location/Qualifiers
source 1..2866
/db_xref="H-InvDB:HIT000035962"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3286 IMAGE:3507776"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2866
/gene="SLC5A6"
/gene_synonym="SMVT"
/db_xref="GeneID:8884"
/db_xref="HGNC:HGNC:11041"
/db_xref="MIM:604024"
CDS 58..1965
/gene="SLC5A6"
/gene_synonym="SMVT"
/codon_start=1
/product="solute carrier family 5 (sodium-dependent
vitamin transporter), member 6"
/protein_id="AAH12806.1"
/db_xref="GeneID:8884"
/db_xref="HGNC:HGNC:11041"
/db_xref="MIM:604024"
/translation="MSVGVSTSAPLSPTSGTSVGMSTFSIMDYVVFVLLLVLSLAIGL
YHACRGWGRHTVGELLMADRKMGCLPVALSLLATFQSAVAILGVPSEIYRFGTQYWFL
GCCYFLGLLIPAHIFIPVFYRLHLTSAYEYLELRFNKTVRVCGTVTFIFQMVIYMGVV
LYAPSLALNAVTGFDLWLSVLALGIVCTVYTALGGLKAVIWTDVFQTLVMFLGQLAVI
IVGSAKVGGLGRVWAVASQHGRISGFELDPDPFVRHTFWTLAFGGVFMMLSLYGVNQA
QVQRYLSSRTEKAAVLSCYAVFPFQQVSLCVGCLIGLVMFAYYQEYPMSIQQAQAAPD
QFVLYFVMDLLKGLPGLPGLFIACLFSGSLSTISSAFNSLATVTMEDLIRPWFPEFSE
ARAIMLSRGLAFGYGLLCLGMAYISSQMGPVLQAAISIFGMVGGPLLGLFCLGMFFPC
ANPPGAVVGLLAGLVMAFWIGIGSIVTSMGSSMPPSPSNGSSFSLPTNLTVATVTTLM
PLTTFSKPTGLQRFYSLSYLWYSAHNSTTVIVVGLIVSLLTGRMRGRSLNPATIYPVL
PKLLSLLPLSCQKRLHCRSYGQDHLDTGLFPEKPRNGVLGDSRDKEAMALDGTAYQGS
SSTCILQETSL"
BASE COUNT 568 a 800 c 742 g 756 t
ORIGIN
1 ccctacccca gagccctgga gcagcaactg gctgcagatc acagacacag tgaggatatg
61 agtgtagggg tgagcacctc agcccctctt tccccaacct cgggcacaag cgtgggcatg
121 tctaccttct ccatcatgga ctatgtggtg ttcgtcctgc tgctggttct ctctcttgcc
181 attgggctct accatgcttg tcgtggctgg ggccggcata ctgttggtga gctgctgatg
241 gcggaccgca aaatgggctg ccttccggtg gcactgtccc tgctggccac cttccagtca
301 gccgtggcca tcctgggtgt gccgtcagag atctaccgat ttgggaccca atattggttc
361 ctgggctgct gctactttct ggggctgctg atacctgcac acatcttcat ccccgttttc
421 taccgcctgc atctcaccag tgcctatgag tacctggagc ttcgattcaa taaaactgtg
481 cgagtgtgtg gaactgtgac cttcatcttt cagatggtga tctacatggg agttgtgctc
541 tatgctccgt cattggctct caatgcagtg actggctttg atctgtggct gtccgtgctg
601 gccctgggca ttgtctgtac cgtctataca gctctgggtg ggctgaaggc cgtcatctgg
661 acagatgtgt tccagacact ggtcatgttc ctcgggcagc tggcagttat catcgtgggg
721 tcagccaagg tgggcggctt ggggcgtgtg tgggccgtgg cttcccagca cggccgcatc
781 tctgggtttg agctggatcc agaccccttt gtgcggcaca ccttctggac cttggccttc
841 gggggtgtct tcatgatgct ctccttatac ggggtgaacc aggctcaggt gcagcggtac
901 ctcagttccc gcacggagaa ggctgctgtg ctctcctgtt atgcagtgtt ccccttccag
961 caggtgtccc tctgcgtggg ctgcctcatt ggcctggtca tgttcgcgta ttaccaggag
1021 tatcccatga gcattcagca ggctcaggca gccccagacc agttcgtcct gtactttgtg
1081 atggatctcc tgaagggcct gccaggcctg ccagggctct tcattgcctg cctcttcagc
1141 ggctctctca gcactatatc ctctgctttt aattcattgg caactgttac gatggaagac
1201 ctgattcgac cttggttccc tgagttctct gaagcccggg ccatcatgct ttccagaggc
1261 cttgcctttg gctatgggct gctttgtcta ggaatggcct atatttcctc ccagatggga
1321 cctgtgctgc aggcagcaat cagcatcttt ggcatggttg ggggaccgct gctgggactc
1381 ttctgccttg gaatgttctt tccatgtgct aaccctcctg gtgctgttgt gggcctgttg
1441 gctgggctcg tcatggcctt ctggattggc atcgggagca tcgtgaccag catgggctcc
1501 agcatgccac cctctccctc taatgggtcc agcttctccc tgcccaccaa tctaaccgtt
1561 gccactgtga ccacactgat gcccttgact accttctcca agcccacagg gctgcagcgg
1621 ttctattcct tgtcttactt atggtacagt gctcacaact ccaccacagt gattgtggtg
1681 ggcctgattg tcagtctact cactgggaga atgcgaggcc ggtccctgaa ccctgcaacc
1741 atttacccag tgttgccaaa gctcctgtcc ctccttccgt tgtcctgtca gaagcggctc
1801 cactgcagga gctacggcca ggaccacctc gacactggcc tgtttcctga gaagccgagg
1861 aatggtgtgc tgggggacag cagagacaag gaggccatgg ccctggatgg cacagcctat
1921 caggggagca gctccacctg catcctccag gagacctccc tgtgatgttg actcaggacc
1981 ccgcctctgt cctcactgtg ccaggccata gccagaggcc accctgtagt acagggatga
2041 gtcttggtgt gttctgcagg gacaggcctg gatgatctag ctcataccaa aggaccttgt
2101 tctgagaggt tcttgcctgc aggagaagct gtcacatctc aagcatgtga ggcaccgttt
2161 ttctcgtcgc ttgccaatct gttttttaaa ggatcaggct cgtagggagc aggatcatgc
2221 cagaaatagg gatggaagtg catcctctgg gaaaaagata atggcttctg attcaacata
2281 gccatagtcc tttgaagtaa gtggctagaa acagcactct ggttataatt gccccagggc
2341 ctgattcagg actgactctc caccataaaa ctggaagctg cttcccctgt agtccccatt
2401 tcagtaccag ttctgccagc cacagtgagc ccctattatt actttcagat tgtctgtgac
2461 actcaagccc ctctcatttt tatctgtcta cctccattct gaagagggag gttttggtgt
2521 ccctggtcct ctgggaatag aagatccatt tgtctttgtg tagagcaagc acgttttcca
2581 cctcactgtc tccatcctcc acctctgaga tggacactta agagacgggg caaatgtgga
2641 tccaagaaac cagggccatg accaggtcca ctgtggagca gccatctatc tacctgactc
2701 ctgagccagg ctgccgtggt gtcatttctg tcatccgtgc tctgtttcct tttggagttt
2761 cttctccaca ttatctttgt tcctggggaa taaaaactac cattggacct agaaaaaaaa
2821 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//