LOCUS BC012767 1927 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting nexin 15, mRNA (cDNA clone MGC:16239
IMAGE:3678551), complete cds.
ACCESSION BC012767
VERSION BC012767.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1927)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1927)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC012767.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 24 Row: i Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46370087.
FEATURES Location/Qualifiers
source 1..1927
/db_xref="H-InvDB:HIT000035938"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:16239 IMAGE:3678551"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1927
/gene="SNX15"
/gene_synonym="HSAF001435"
/db_xref="GeneID:29907"
/db_xref="HGNC:HGNC:14978"
/db_xref="MIM:605964"
CDS 101..1129
/gene="SNX15"
/gene_synonym="HSAF001435"
/codon_start=1
/product="sorting nexin 15"
/protein_id="AAH12767.1"
/db_xref="GeneID:29907"
/db_xref="HGNC:HGNC:14978"
/db_xref="MIM:605964"
/translation="MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDVK
EVVVWKRYSDFRKLHGDLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAED
LLRFTVHIPALNNSPQLKEFFRGGEVTRPLEVSRDLHILPPPLIPTPPPDDPRLSQLL
PAERRGLEELEVPVDPPPSSPAQEALDLLFNCESTEEASGSPARGPLTEAELALFDPF
SKEEGAAPSPTHVAELATMEVESARLDQEPWEPGGQEEEEDGEGGPTPAYLSQATELI
TQALRDEKAGAYAAALQGYRDGVHVLLQGVPSDPLPARQEGVKKKAAEYLKRAEEILR
LHLSQLPP"
BASE COUNT 429 a 577 c 529 g 392 t
ORIGIN
1 cgcaggcctg gcgaggcggc ggcgggcgga ggctgggccg gaggggtggg gacggcgagg
61 aggtggaggc cggcgctccg ctccgctcca gctcggtttc atgtcccgcc aggcgaagga
121 tgacttcctg cggcactaca cagtgtcgga ccccaggact caccccaagg gctacaccga
181 gtacaaagta accgcgcagt tcatctcaaa gaaggaccca gaggatgtca aagaggtggt
241 ggtctggaag cggtacagcg acttccgcaa gctgcatgga gacctggcct acacccaccg
301 caacctcttc cgccgcctcg aggagttccc tgctttcccc cgggcccagg tgtttggccg
361 gtttgaagcc tcagtgatcg aggagcggcg aaagggggca gaggacctgc ttcgcttcac
421 tgtgcacata cctgcgctca acaacagccc ccagctcaag gagttcttcc ggggtgggga
481 ggtgacccga cccttggagg tgtccaggga cctacacatc ctgccacccc ctctgatccc
541 caccccgccc cctgatgacc cccggctatc ccaactgctc cctgcagaaa ggaggggcct
601 cgaggaattg gaggtgccag tggacccccc accatccagc cctgcccagg aggccctgga
661 tctcctcttt aactgtgaga gcaccgagga ggcatctggt tcccctgccc gaggccccct
721 caccgaggct gagcttgccc tcttcgaccc cttctccaag gaagaaggcg cagcccccag
781 ccccacccat gtggctgagc tggcaacgat ggaggtggag tctgcaaggc tggaccagga
841 accctgggag ccaggagggc aggaggagga agaggatggg gaaggagggc ccacccctgc
901 ctacctaagc caggccacag agctcatcac ccaggccctg cgggatgaga aggcaggcgc
961 ttacgctgct gcactccagg gctatcgaga cggcgtgcac gtcttgcttc agggagtccc
1021 cagtgacccg ttgcctgccc gccaggaagg tgtgaagaag aaggcagctg agtacctgaa
1081 gcgggcagag gagatcctgc gcctgcacct gtctcaactc ccaccctaac agggagtggg
1141 ccattccctg ggactctcgc tcctgcactg ccagcccctt ctcctctccc cagggcctgg
1201 ccctacctcc tggtcttgta attacaggag ccatttctgt aggtaactgg accaagaatg
1261 agaaaaataa tgaattctta gctccctgat tacacctgcc accttggaat ccaggactca
1321 cacttctgac cctgcctgtc tttttggggt ttttttgagt tggagtctcg ctgtgtcgcc
1381 cagactggag tgcagtggtg ggatcgcggc tcactgcaac ctccacctcc caggttcaag
1441 cagttctcct gtctcagcct ccccagtagc tgagattgca ggcacatgcc accacgccca
1501 gctaatattt tgtattttca gtagggacgg ggttacacca tgttggccag gctggtctcg
1561 aactcctgac ctcaagtgat ccacccgcct cagtctccca aagtgctgag attacaggca
1621 tgagtcacta cgcccggccc atgtctgtct gtcttgatgt gtgagcagca gctgtggtca
1681 ttaaaccatt agtttacccc tctagaactg gggtctgcaa actcccacct gcagccaaat
1741 ctggcccacc tcctttttaa tgtaagggct gtgagagtgg tttttacttt ttttaatgat
1801 taaaaaaatc aaaataatat tctgtgacaa tgacaggtga aatttatatg tgacaagtga
1861 aaattatatg aaatttaaga gtccataaat aaaatttgtt ggaacacaaa aaaaaaaaaa
1921 aaaaaaa
//