LOCUS BC012151 4594 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens nuclear transcription factor, X-box binding 1, mRNA
(cDNA clone MGC:20369 IMAGE:4558442), complete cds.
ACCESSION BC012151
VERSION BC012151.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4594)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4594)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: d Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 22212923.
FEATURES Location/Qualifiers
source 1..4594
/db_xref="H-InvDB:HIT000035694"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20369 IMAGE:4558442"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..4594
/gene="NFX1"
/gene_synonym="MGC20369"
/gene_synonym="NFX2"
/db_xref="GeneID:4799"
/db_xref="HGNC:HGNC:7803"
/db_xref="MIM:603255"
CDS 27..3389
/gene="NFX1"
/gene_synonym="MGC20369"
/gene_synonym="NFX2"
/codon_start=1
/product="nuclear transcription factor, X-box binding 1"
/protein_id="AAH12151.1"
/db_xref="GeneID:4799"
/db_xref="HGNC:HGNC:7803"
/db_xref="MIM:603255"
/translation="MAEAPPVSGTFKFNTDAAEFIPQEKKNSGLNCGTQRRLDSNRIG
RRNYSSPPPCHLSRQVPYDEISAVHQHSYHPSGSKPKSQQTSFQSSPCNKSPKSHGLQ
NQPWQKLRNEKHHIRVKKAQSLAEQTSDTAGLESSTRSESGTDLREHSPSESEKEVVG
ADPRGAKPKKATQFVYSYGRGPKVKGKLKCEWSNRTTPKPEDAGPESTKPVGVFHPDS
SEASSRKGVLDGYGARRNEQRRYPQKRPPWEVEGARPRPGRNPPKQEGHRHTNAGHRN
NMGPIPKDDLNERPAKSTCDSENLAVINKSSRRVDQEKCTVRRQDPQVVSPFSRGKQN
HVLKNVETHTGSLIEQLTTEKYECMVCCELVRVTAPVWSCQSCYHVFHLNCIKKWARS
PASQADGQSGWRCPACQNVSAHVPNTYTCFCGKVKNPEWSRNEIPHSCGEVCRKKQPG
QDCPHSCNLLCHPGPCPPCPAFMTKTCECGRTRHTVRCGQAVSVHCSNPCENILNCGQ
HQCAELCHGGQCQPCQIILNQVCYCGSTSRDVLCGTDVGKSDGFGDFSCLKICGKDLK
CGNHTCSQVCHPQPCQQCPRLPQLVRCCPCGQTPLSQLLELGSSSRKTCMDPVPSCGK
VCGKPLPCGSLDFIHTCEKLCHEGDCGPCSRTSVISCRCSFRTKELPCTSLKSEDATF
MCDKRCNKKRLCGRHKCNEICCVDKEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQ
ASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDHPVYHSCHSEEKCPPCTFL
TQKWCMGKHEFRSNIPCHLVDISCGLPCSATLPCGMHKCQRLCHKGECLVDEPCKQPC
TTPRADCGHPCMAPCHTSSPCPVTACKAKVELQCECGRRKEMVICSEASSTYQRIAAI
SMASKITDMQLGGSVEISKLITKKEVHQARLECDEECSALERKKRLAEAFHISEDSDP
FNIRSSGSKFSDSLKEDARKDLKFVSDVEKEMETLVEAVNKGKNSKKSHSFPPMNRDH
RRIIHDLAQVYGLESVSYDSEPKRNVVVTAIRGKSVCPPTTLTGVLEREMQARPPPPI
PHHRHQSDKNPGSSNLQKITKEPIIDYFDVQD"
BASE COUNT 1315 a 1064 c 1092 g 1123 t
ORIGIN
1 gctcgatcta ggttctgcgg cacgggatgg cggaggcgcc tcctgtctca ggtactttta
61 aattcaatac agatgctgct gaattcattc ctcaggagaa aaaaaattct ggtctaaatt
121 gtgggactca aaggagacta gactctaata ggattggtag aagaaattac agttcaccac
181 ctccctgtca cctttccagg caggtccctt atgatgaaat ctctgctgtt catcagcata
241 gttatcatcc gtcaggaagc aaacctaaga gtcagcagac gtctttccag tcctctcctt
301 gtaataaatc gcccaagagc catggccttc agaatcaacc ttggcagaaa ttgaggaatg
361 agaagcacca tatcagagtc aagaaagcac agagtcttgc tgagcagacc tcagatacag
421 ctggattaga gagctcgacc agatcagaga gtgggacaga cctcagagag catagtcctt
481 ctgagagtga gaaggaagtt gtgggtgcag atcccagggg agcaaaaccc aaaaaagcaa
541 cacagtttgt atacagctat ggtagaggac caaaagtcaa ggggaaactc aaatgtgaat
601 ggagtaaccg aacaactcca aaaccggagg atgctggacc cgaaagtacc aaacctgtgg
661 gggttttcca ccctgactct tcagaggcat cctctagaaa aggagtattg gatgggtatg
721 gagccagacg aaatgagcag agaagatacc cacagaaaag gcctccctgg gaagtggagg
781 gggccaggcc acgaccaggc agaaatccac caaaacagga gggccaccga catacaaacg
841 caggacacag aaacaacatg ggccccattc caaaggatga cctcaatgaa agaccagcaa
901 aatctacctg tgacagtgag aacttggcag tcatcaacaa gtcttccagg agggttgacc
961 aagagaaatg cactgtacgg aggcaggatc ctcaagtagt atctcctttc tcccgaggca
1021 aacagaacca tgtgctaaag aatgtggaaa cgcacacagg ttctctaatt gaacaactaa
1081 caacagaaaa atacgagtgc atggtgtgct gtgaattggt tcgtgtcacg gccccagtgt
1141 ggagttgtca gagctgttac catgtgtttc atttgaactg cataaagaaa tgggcaaggt
1201 ctccagcatc tcaagcagat ggccagagtg gttggaggtg ccctgcctgt cagaatgttt
1261 ctgcacatgt tcctaatacc tacacttgtt tctgtggcaa ggtaaagaat cctgagtgga
1321 gcagaaatga aattccacat agctgtggtg aggtttgtag aaagaaacag cctggccagg
1381 actgcccaca ttcctgtaac cttctctgcc atccaggacc ctgcccaccc tgccctgcct
1441 ttatgacaaa aacatgtgaa tgtggacgaa ccaggcacac agttcgctgt ggtcaggctg
1501 tctcagtcca ctgttctaac ccatgtgaga atattttgaa ctgtggtcag caccagtgtg
1561 ctgagctgtg ccatgggggt cagtgccagc cttgccagat cattttgaac caggtatgct
1621 attgcggcag cacctcccga gatgtgttat gtggaaccga tgtaggaaag tctgatggat
1681 ttggggattt cagctgttta aagatatgtg gcaaggactt gaaatgcggt aaccatacat
1741 gttcgcaagt gtgccaccct cagccctgcc agcaatgccc acggctcccc cagctggtgc
1801 gctgttgccc ctgtggccaa actcctctca gccaattgct agaacttgga agtagtagtc
1861 ggaaaacatg catggaccct gtgccttcat gtggaaaagt gtgcggcaag cctctgcctt
1921 gtggttcctt agatttcatt catacctgtg aaaagctctg ccatgaagga gactgtggac
1981 catgctctcg cacatcagtt atttcctgca gatgctcttt cagaacaaag gagcttccat
2041 gtaccagtct caaaagtgaa gatgctacat ttatgtgtga caagcggtgt aacaagaaac
2101 ggttgtgtgg acggcataaa tgtaatgaga tatgctgtgt ggataaggag cacaagtgtc
2161 ctttgatttg tgggaggaaa ctccgttgtg gccttcatag gtgtgaagaa ccttgtcatc
2221 gtggaaactg ccagacatgc tggcaagcca gttttgatga attaacctgc cattgtggtg
2281 catcagtgat ttaccctcca gttccctgtg gtactaggcc ccctgaatgt acccaaacct
2341 gcgctagagt ccatgagtgt gaccatccag tatatcattc ttgtcatagt gaggagaagt
2401 gtcccccttg cactttccta actcagaagt ggtgcatggg caagcatgag tttcggagca
2461 acatcccctg tcacctggtt gatatctctt gcggattacc ctgcagtgcc acgctaccat
2521 gtgggatgca caaatgtcag agactctgtc acaaagggga gtgtcttgtg gatgagccct
2581 gcaagcagcc ctgcaccacc cccagagctg actgtggtca cccgtgtatg gcaccctgcc
2641 ataccagctc accctgccct gtgactgctt gtaaagctaa ggtagagcta cagtgtgaat
2701 gtggacgaag aaaagagatg gtgatttgct ctgaagcatc tagtacttat caaagaatag
2761 ctgcaatctc catggcctct aagataacag acatgcagct tggaggttca gtggagatca
2821 gcaagttaat taccaaaaag gaagttcatc aagccaggct ggagtgtgat gaggagtgtt
2881 cagccttgga aaggaaaaag agattagcag aggcatttca tatcagtgag gattctgatc
2941 ctttcaatat acgttcttca gggtcaaaat tcagtgatag tttgaaagaa gatgccagga
3001 aggacttaaa gtttgtcagt gacgttgaga aggaaatgga aaccctcgtg gaggccgtga
3061 ataagggaaa gaatagtaag aaaagccaca gcttccctcc catgaacaga gaccaccgcc
3121 ggatcatcca tgacttggcc caagtttatg gcctggagag cgtgagctat gacagtgaac
3181 cgaagcgcaa tgtggtggtc actgccatca gggggaagtc cgtttgtcct cctaccacgc
3241 tgacaggtgt gcttgaaagg gaaatgcagg cacggcctcc accaccgatt cctcatcaca
3301 gacatcagtc agacaagaat cctgggagca gtaatttaca gaaaataacc aaggagccaa
3361 taattgacta ttttgacgtc caggactaag aagatcatga tgcacttaga taaaagaatg
3421 attaggtata gtggagactt atttgccagc agataaatca tgcccgttcc cctctgcctg
3481 gcagaatcac agtctcacat actgtcttgt actgacacat ccaaagcatg agtgtgtcag
3541 aaatcccttg tctattcctg tctgtataaa gtgtttcatt atgaccagat ctctgattgt
3601 atggtcacta ggtatgcaat cacgcattca aagaggctct ttacaccatc actgtgattg
3661 ctctgagagt tgagggacta ttgggcttta tttggacaaa ccaaactttt agcctgaaac
3721 caactttatg ccactaagtc atagcctcag ttgtcccagt tatttgtcct cctgaaaatg
3781 cctgaaacat cagacagaca ttgcttgctt tacccaaact gatcaaaatc tttaggagca
3841 caaatgaatt ttttagtctg aaataccaaa taatgaattg gtataccata tccggaatca
3901 cacatgttat cttaaaccca gccatcatac ctaagtcttt tgccaaaacc tctcataggt
3961 atatctagct gaacttattt tggcattttc aatgtgatca gttctagacc tagaaggggg
4021 tcaggctgct ttacagaatt ctatttcctt aagtccctgg cacttctcat accacatcac
4081 tgaacctgtt cagtaacaat cagtttggcc gtcccccatg atggtaggaa atatagagag
4141 caagttcttc tgccagggtc acactgtggt ctctgaactg accagtatat ccctaactcc
4201 tctttgatag agaaagagtc tcaaatggac aactgtcctg tgttgctttc cctaggcctt
4261 cagcagccta ttggctctcc ctgcctctga gctctggact ctgtttgaat attccaagta
4321 gtatatggac agtccagggc ttatgcccag cagcccactg gaggcattct tcaggctcct
4381 ttaaggcagg tgcattgata gttccattag tgtgaccctt gcattggcac ccctccagcc
4441 tggaggccag gcttccagca acttccttct gccctagagc aagccatgag ccccagagca
4501 gtagcaggag acttgagaag tagagtgaca aaaacaagca cttaattaaa ttataaaatt
4561 taactttaaa aaaaaaaaaa aaaaaaaaaa aaaa
//