LOCUS BC012124 1386 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens cancer susceptibility candidate 4, mRNA (cDNA clone
IMAGE:4564707), complete cds.
ACCESSION BC012124
VERSION BC012124.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1386)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1386)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: h Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 29826290
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1386
/db_xref="H-InvDB:HIT000035677"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4564707"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1386
/gene="CASC4"
/gene_synonym="H63"
/db_xref="GeneID:113201"
CDS 300..833
/gene="CASC4"
/gene_synonym="H63"
/codon_start=1
/product="CASC4 protein"
/protein_id="AAH12124.1"
/db_xref="GeneID:113201"
/translation="MVGFGANRRAGRLPSLVLVVLLVVIVVLAFNYWSISSRHVLLQE
EVAELQGQVQRTEVARGRLEKRNSDLLLLVDTHKKQIDQKEADYGRLSSRLQAREGLG
KRCEDDKVKLQNNISYQMADIHHLKEQLAELRQEFLRQEDQLQDYRKNNTYLVKRLEY
ESKRPKRFNQMMERNWI"
BASE COUNT 343 a 354 c 412 g 277 t
ORIGIN
1 ccgtgaggtg ttgggtttgg gggacgctgg cagctgggtt ctcccggttc ccttgggcag
61 gtgcagggtc gggttcaaag cctccggaac gcgttttggc ctgatttgag gaggggggcg
121 gggagggacc tgcggcttgc ggccccgccc ccttctccgg ctcgcagccg accggtaagc
181 ccgcctcctc cctcggccgg ccctggggcc gtgtccgccg ggcaactcca gccgaggcct
241 gggcttctgc ctgcaggtgt ctgcggcgag gcccctaggg tacagcccga tttggcccca
301 tggtgggttt cggggccaac cggcgggctg gccgcctgcc ctctctcgtg ctggtggtgc
361 tgctggtggt gatcgtcgtc ctcgccttca actactggag catctcctcc cgccacgtcc
421 tgcttcagga ggaggtggcc gagctgcagg gccaggtcca gcgcaccgaa gtggcccgcg
481 ggcggctgga aaagcgcaat tcggacctct tgctgttggt ggacacgcac aagaaacaga
541 tcgaccagaa ggaggccgac tacggccgcc tcagcagccg gctgcaggcc agagagggcc
601 tcgggaagag atgcgaggat gacaaggtta aactacagaa caacatatcg tatcagatgg
661 cagacataca tcatttaaag gagcaacttg ctgagcttcg tcaggaattt cttcgacaag
721 aagaccagct tcaggactat aggaagaaca atacttacct tgtgaagagg ttagaatatg
781 aaagcaagag acccaaaaga ttcaatcaaa tgatggaaag gaattggata taaacaatca
841 agtagtacct aaaaatattc caaaagtagc tgagaatgtt gcagataaga atgaagaacc
901 ctcaagcaat catattccac atgggaaaga acaaatcaaa agaggtggtg atgcagggat
961 gcctggaata gaagagaatg acctagcaaa agttgatgat cttccccctg gccctggttc
1021 ccagacatca tctctgaacc tgctggggga atttgccacc ctgaaaggaa ggacacaagc
1081 ccagctggct tcatcatctg ctgattgtgg agctctaggg ccttgagcaa acatatgtgg
1141 tagccaggta gtggttacag caggccttgg taagacccag tgctgtattg gcttcaggtc
1201 taacccagca cagttctaat ggtggtgcca cagtggtaca tgcctatagt cccagctact
1261 ccagaagctg aggtgggaag atcacttgag cctgggagat tgaggctgca gtgagctgag
1321 atcatgccat tgcactccag cttgggcacc agagcaagac cttgtctcaa aaaaaaaaaa
1381 aaaaaa
//