LOCUS BC012111 3244 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chromobox homolog 6, mRNA (cDNA clone MGC:20115
IMAGE:4554483), complete cds.
ACCESSION BC012111
VERSION BC012111.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3244)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3244)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: c Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46852391.
FEATURES Location/Qualifiers
source 1..3244
/db_xref="H-InvDB:HIT000035667"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:20115 IMAGE:4554483"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_46"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3244
/gene="CBX6"
/db_xref="GeneID:23466"
/db_xref="HGNC:HGNC:1556"
CDS 24..1262
/gene="CBX6"
/codon_start=1
/product="chromobox homolog 6"
/protein_id="AAH12111.1"
/db_xref="GeneID:23466"
/db_xref="HGNC:HGNC:1556"
/translation="MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEP
EENILDSRLIAAFEQKERERELYGPKKRGPKPKTFLLKARAQAEALRISDVHFSVKPS
ASASSPKLHSSAAVHRLKKDIRRCHRMSRRPLPRPDPQGGSPGLRPPISPFSETVRII
NRKVKPREPKRNRIILNLKVIDKGAGGGGAGQGAGALARPKVPSRNRVIGKSKKFSES
VLRTQIRHMKFGAFALYKPPPAPLVAPSPGKAEASAPGPGLLLAAPAAPYDARSSGSS
GCPSPTPQSSDPDDTLPKLLPETVSPSAPSWREPEVLDLSLPPESAATSKRAPPEVTA
AAGPAPPTAPEPAGASSEPEAGDWRPEMSPCSNVVVTDVTSNLLTVTIKEFCNPEDFE
KVAAGVAGAAGGGGSIGASK"
BASE COUNT 569 a 1074 c 980 g 621 t
ORIGIN
1 ggctgtgggt gccgctgagc aagatggagc tgtctgcagt gggcgagcgg gtcttcgcgg
61 ccgaatccat catcaaacgg cggatccgaa agggacgcat cgagtacctg gtgaaatgga
121 aggggtgggc gatcaagtac agcacttggg agcccgagga gaacatcctg gactcgcggc
181 tcattgcagc cttcgaacaa aaggagaggg agcgtgagct gtatgggccc aagaagaggg
241 gacccaaacc caaaactttc ctcctgaagg cgcgggccca ggccgaggcc ctccgcatca
301 gtgatgtgca tttctctgtc aagccgagcg ccagtgcctc ctcgcccaag ctgcactcca
361 gcgcagccgt gcaccggctc aagaaggaca tccgccgctg ccaccgtatg tcccgccgtc
421 ccctgccccg cccggacccg caggggggca gccccggact gcgcccgccc atttcgccct
481 tctcggagac ggtgcgcatc atcaaccgca aggtgaagcc gcgggagccc aagcggaacc
541 gcatcatcct gaacctgaag gtgatcgaca agggcgctgg cggcgggggc gccgggcagg
601 gggccggggc gctggcccgc cccaaagtcc cctcgcggaa ccgcgttata ggcaagagca
661 agaagttcag cgagagcgtc ctgcgtacac agatccgcca catgaagttc ggcgcctttg
721 cgctgtacaa gcctccgccc gcccccctgg tagccccgtc ccccggcaag gctgaggcct
781 cagccccggg ccctgggcta cttctggccg cccccgccgc cccctacgac gcccgcagct
841 ctggctcctc cggctgcccc tcgcctacac cacagtcctc tgaccccgac gacacgctcc
901 ccaagctcct ccccgagacc gtgagcccat ccgcccccag ctggcgcgag ccggaggtgc
961 tcgacctgtc cctccctccc gagtcggcag ccaccagcaa gcgggcaccg cctgaggtca
1021 cagctgctgc cggcccggca cctcccacgg cccctgagcc cgccggtgcc tcctccgagc
1081 ccgaggctgg ggactggcgc cccgagatgt caccctgctc caatgtggtc gtcaccgatg
1141 tcaccagcaa cctcctgacg gtcacaatca aggaattctg caaccctgag gatttcgaga
1201 aggtggctgc tggggtagca ggcgccgctg ggggcggtgg cagcattggg gcgagcaagt
1261 gagggggctc caccaaggag gggggcttgg gggggccctc ctgcccgaag tcatactctt
1321 gctcccaccc cacccttgcc cccagccctc tctccctgtg ctttgcttgt ctcaaatggc
1381 tcggtgttga cccagggatg gggctgggta gttggggtcc cagaaagccg ggggtagggg
1441 ccaccctgga atggggcagg ggaagggcac accccctgcc catgcatggt agcccactgg
1501 gtggtttctg gaaagcccta gaaactaggg ttcctctgcc ccttccacat cccacctgtc
1561 tctctagctt gcttcctgct ctcctgtgcg gcgtctgatt tctcggtgct aacctggcag
1621 ctgtggggcc cttaggagcc ccccaccgag ggtggacaca gtccctttcc ttcctgcaga
1681 tgcctaggca ggaggagggc ttcctgcctg tttggcaaag tcccaggcag aggccaagga
1741 tgaggcctga ctcggctcct ccctccacat cagccagggc atcagaagtt gggccagggc
1801 ggggtcttcc ctgctcgatt ttggacgagg cctaagtaga ccccctatgc cctgccccag
1861 ccctggctct ttcctaaccc cctcaacggt gggaggaact ggcagagggt gcgcctggcc
1921 acagcctccc cgcatctaaa ggccccttca gttcttgacc aaaggtgcta cgagaacctg
1981 ccgtggaaac ttccagttgt gcgtctgccc cactcgctgt gtttgtccgt gggttcatac
2041 atgcattggg tgctaggccc caggctgccg ggtggcaccc tttacagttc ctttgaacag
2101 gggcattgaa ggcctggact gcctctcgcc tcagtaggcc tggggaccag gcttgggtct
2161 ggaggtttgc tgtggaagtc accaggcctc ccctcctggc ccaggtgtgc tgggggcacc
2221 gtgcccccca cccccctgcc ctcctcaggg tggtcagccc aacctgtcgg accttcactt
2281 cacatcatgg tggggaccga gatagagagg gagaccccat tccaagctcc ctcttcctcc
2341 cggtgtttgg ggaggatgct gaagaatcca ttcccgaggg cctcccggct tgtcccagcc
2401 cctcttttgc ttctgaccac ggaggctttc tcacagccca gcctgcctga agcaaaggag
2461 gctcccgtgt cctgggcagc ttctgtttcc ctctgctgcc tgggagctga ggcacccgtg
2521 ccagtggcag aggccacagc cccagcctta ggccaggccc tgggagggca ggcaggcaaa
2581 ggggagacca gagggtctgt gttctccagg agaatgaggg tgttggtccc agaattggga
2641 ccggggcccc gctggccagc cctgggccac ttcccgggtc tccattgtgc gtgggtggcg
2701 tgttccaggc gtggctggag ctggcttcct ggctgtgctg ccatgggccc ctccctcaga
2761 agcacgttgg caggaggccg atcagaaccc tagcgccttt ggtcctaaga atgggaggct
2821 gccttccttc ccaatctccc tgccagggcc cacagcgtgg ccctagccct cccctccccg
2881 ggatgtagaa cggggaccct cgcagggttg gggcgggggc tgatactcct cggcccctcc
2941 ctaccctgcc ctgtgtgttg gctttgtggc cgtccaagtg ccaattggct tttcgcccaa
3001 ataagggctg gtatttctcc tctgtccttg gaggtgattt ccccctgacc ccctccccca
3061 ggtgagtgac cacctgggtg ccagttacag gtgtttccag agaccataga aatgtgtttt
3121 cctgagagtt cgtgtcattc gtgacttttt tgtaaagaag ttgtgttttc agaggtgatt
3181 ttatgacagg aaagtgaaag aattagtttt gcaaaaaaac aaaaacaaaa aaaaaaaaaa
3241 aaaa
//