LOCUS BC012110 1592 bp mRNA linear HTC 06-JAN-2004 DEFINITION Homo sapiens TPTE pseudogene, mRNA (cDNA clone IMAGE:4577083), with apparent retained intron. ACCESSION BC012110 VERSION BC012110.1 KEYWORDS HTC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1592) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1592) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield, Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin, Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott, Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy, George Yang, Scott Zuyderduyn, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 29 Row: i Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis, Similarity but not identity to protein This clone has the following problem: retained intron. FEATURES Location/Qualifiers source 1..1592 /db_xref="H-InvDB:HIT000087785" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4577083" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" BASE COUNT 386 a 517 c 314 g 375 t ORIGIN 1 gcctctcccg gtacctgctg ctgctcccgg ggcttcggga aatgcgagag tctgagccgg 61 ggaggaggaa cccgagcagc ggcggcggcg gccgcggcgg cgggagcccc ccaagaggag 121 gaccgggatc catgtgtctt tcctggtgac taggatgtcg tcggaggaga acaagtgcgt 181 ggagcagccg cagccaccac cccccgagga gcctggagcc ccggccccga gccccccagc 241 cgcagacaaa agacctcggg gccggcctcg caaggcgctt cccctttcca gagagccaga 301 aagaaactca gcccacctgc acccaggtga aataaacagc tttattgctc acacgaagcc 361 tgtttggtgg tctcttcaca cggatgcgca tgaaatttgg tgccgtgact tggatcgggg 421 gacctccctt aggagatcaa tcccctgtcc tcctgctctt tgctccgtga gaaagatcca 481 cctacgacct caggtcctca gaccgaccag cccaagaaac atctcaccaa tttcaaatct 541 gatctattcg gcttagcgac tgaagattga cgctgcccaa tcgcctcgga agtcccctgg 601 accatcacag aagccgagct tcgggtaact ctcacagtgg agggtaagtc catcccctgt 661 ttaatcgata cgggggctac ccactccacg ttgccttctt ttcaagggcc tgtttccctt 721 gcccccataa ctgttgtggg tattgacggc caagcttcaa aacccctgaa aactccccca 781 ctctggtgcc aacttggaca acactctttt atgcactctt ttttagttat ccccacctgc 841 ccacttccct tattaggccg aaatatttta accaaattat ctgcttccct gactattcct 901 ggagtacagc tacatctcat tgctgccctt cttcccaatc caaagcctcc tttgtgtcct 961 ctaacatccc cacaatatca ccccttacca caagacctcc cttcagctta atctctccca 1021 ctctaggttc ccacgccgcc cctaatccca cttgaagcag ccctgagaaa catcgcccat 1081 tctctctcca taccaccccc caaaaatttt cgccgctcca acacttcaac actattttgt 1141 tttatttgtc ttattaatat cagaaggcag gaatgtcagg cctctgagcc caggccaggc 1201 catcgcatcc cctgtgactt gcacgtgtac atccagatgg cctgaagtaa ctgaagatcc 1261 acaaaagaag taaaaacagc cttaactgat gacattccac cattgtgatt tgttcctgcc 1321 ccaccctaac tgatcaatgt actttgtaat ctcccccacc cttaagaagg ttctttgtaa 1381 ttctccccac ccttgagaat gtactttgtg agatccaccc ctgcccacca gagaacaacc 1441 ccctttgatt gtaatttttt attaccttcc caaatcctat aaaacagccc cacccctatc 1501 ttccttcact gactctcttt tcggactcag cccaccggca cccaggtgaa ataaacagct 1561 ttattgctca aaaaaaaaaa aaaaaaaaaa aa //