LOCUS       BC012110                1592 bp    mRNA    linear   HTC 06-JAN-2004
DEFINITION  Homo sapiens TPTE pseudogene, mRNA (cDNA clone IMAGE:4577083), with
            apparent retained intron.
ACCESSION   BC012110
VERSION     BC012110.1
KEYWORDS    HTC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1592)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 1592)
  AUTHORS   Strausberg,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-AUG-2001) National Institutes of Health, Mammalian
            Gene Collection (MGC), Cancer Genomics Office, National Cancer
            Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
            USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: ATCC/DCTD/DTP
            cDNA Library Preparation: Rubin Laboratory
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Genome Sequence Centre,
            BC Cancer Agency, Vancouver, BC, Canada
            info@bcgsc.bc.ca
            Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
            Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
            Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
            Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
            Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
            Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
            Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
            George Yang, Scott Zuyderduyn, Marco Marra.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAL Plate: 29 Row: i Column: 6
            This clone was selected for full length sequencing because it
            passed the following selection criteria: Hexamer frequency ORF
            analysis, Similarity but not identity to protein
            This clone has the following problem: retained intron.
FEATURES             Location/Qualifiers
     source          1..1592
                     /db_xref="H-InvDB:HIT000087785"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="IMAGE:4577083"
                     /tissue_type="Skin, melanotic melanoma."
                     /clone_lib="NIH_MGC_20"
                     /lab_host="DH10B-R"
                     /note="Vector: pOTB7"
BASE COUNT          386 a          517 c          314 g          375 t
ORIGIN      
        1 gcctctcccg gtacctgctg ctgctcccgg ggcttcggga aatgcgagag tctgagccgg
       61 ggaggaggaa cccgagcagc ggcggcggcg gccgcggcgg cgggagcccc ccaagaggag
      121 gaccgggatc catgtgtctt tcctggtgac taggatgtcg tcggaggaga acaagtgcgt
      181 ggagcagccg cagccaccac cccccgagga gcctggagcc ccggccccga gccccccagc
      241 cgcagacaaa agacctcggg gccggcctcg caaggcgctt cccctttcca gagagccaga
      301 aagaaactca gcccacctgc acccaggtga aataaacagc tttattgctc acacgaagcc
      361 tgtttggtgg tctcttcaca cggatgcgca tgaaatttgg tgccgtgact tggatcgggg
      421 gacctccctt aggagatcaa tcccctgtcc tcctgctctt tgctccgtga gaaagatcca
      481 cctacgacct caggtcctca gaccgaccag cccaagaaac atctcaccaa tttcaaatct
      541 gatctattcg gcttagcgac tgaagattga cgctgcccaa tcgcctcgga agtcccctgg
      601 accatcacag aagccgagct tcgggtaact ctcacagtgg agggtaagtc catcccctgt
      661 ttaatcgata cgggggctac ccactccacg ttgccttctt ttcaagggcc tgtttccctt
      721 gcccccataa ctgttgtggg tattgacggc caagcttcaa aacccctgaa aactccccca
      781 ctctggtgcc aacttggaca acactctttt atgcactctt ttttagttat ccccacctgc
      841 ccacttccct tattaggccg aaatatttta accaaattat ctgcttccct gactattcct
      901 ggagtacagc tacatctcat tgctgccctt cttcccaatc caaagcctcc tttgtgtcct
      961 ctaacatccc cacaatatca ccccttacca caagacctcc cttcagctta atctctccca
     1021 ctctaggttc ccacgccgcc cctaatccca cttgaagcag ccctgagaaa catcgcccat
     1081 tctctctcca taccaccccc caaaaatttt cgccgctcca acacttcaac actattttgt
     1141 tttatttgtc ttattaatat cagaaggcag gaatgtcagg cctctgagcc caggccaggc
     1201 catcgcatcc cctgtgactt gcacgtgtac atccagatgg cctgaagtaa ctgaagatcc
     1261 acaaaagaag taaaaacagc cttaactgat gacattccac cattgtgatt tgttcctgcc
     1321 ccaccctaac tgatcaatgt actttgtaat ctcccccacc cttaagaagg ttctttgtaa
     1381 ttctccccac ccttgagaat gtactttgtg agatccaccc ctgcccacca gagaacaacc
     1441 ccctttgatt gtaatttttt attaccttcc caaatcctat aaaacagccc cacccctatc
     1501 ttccttcact gactctcttt tcggactcag cccaccggca cccaggtgaa ataaacagct
     1561 ttattgctca aaaaaaaaaa aaaaaaaaaa aa
//