LOCUS BC012072 3189 bp mRNA linear HUM 04-OCT-2003 DEFINITION Homo sapiens checkpoint with forkhead and ring finger domains, mRNA (cDNA clone MGC:19963 IMAGE:4650348), complete cds. ACCESSION BC012072 VERSION BC012072.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3189) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3189) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (02-AUG-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield, Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin, Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott, Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy, George Yang, Scott Zuyderduyn, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 29 Row: n Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 8922674. FEATURES Location/Qualifiers source 1..3189 /db_xref="H-InvDB:HIT000035636" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:19963 IMAGE:4650348" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_21" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..3189 /gene="CHFR" /gene_synonym="FLJ10796" /gene_synonym="RNF116" /db_xref="GeneID:55743" /db_xref="MIM:605209" CDS 9..1967 /gene="CHFR" /gene_synonym="FLJ10796" /gene_synonym="RNF116" /codon_start=1 /product="CHFR protein" /protein_id="AAH12072.1" /db_xref="GeneID:55743" /db_xref="MIM:605209" /translation="MERPEEGKQSPPPQPWGRLLRLGAEEGEPHVLLRKREWTIGRRR GCDLSFPSNKLVSGDHCRIVVDEKSGQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDV IYLVYRKNEPEHNVAYLYESLSEKQGMTQESFDTSGAGAGRGADPRVPPSSPATQVCF EEPQPSTSTSDLFPTASASSTEPSPAGRERSSSCGSGGGGISPKGSGPSVASDEVSSF ASALPDRKTASFSSLEPQDQEDLEPVKKKMRGDGDLDLNGQLLVAQPRRNAQTVHEDV RAAAGKPDKMEETLTCIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPV ERICKNHILNNLVEAYLIQHPDKSRSEEDVQSMDARNKITQDMLQPKVRRSFSDEEGS SEDLLELSDVDSESSDISQPYVVCRQCPEYRRQAAQPPHCPAPEGEPGAPQALGDAPS TSVSLTTAVQDYVCPLQGSHALCTCCFQPMPDRRVEREQDPRVAPQQCAVCLQPFCHL YWGCTRTGCYGCLAPFCELNLGDKCLDGVLNNNSYESDILKNYLATRGLTWKNMLTES LVALQRGVFLLSDYRVTGDTVLCYCCGLRSFRELTYQYRQNIPASELPVAVTSRPDCY WGRNCRTQVKAHHAMKFNHICEQTRFKN" misc_feature 120..317 /gene="CHFR" /gene_synonym="FLJ10796" /gene_synonym="RNF116" /note="FHA; Region: FHA domain. The FHA (Forkhead-associated) domain is a phosphopeptide binding motif" /db_xref="CDD:pfam00498" misc_feature 879..1010 /gene="CHFR" /gene_synonym="FLJ10796" /gene_synonym="RNF116" /note="HRD1; Region: COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]" /db_xref="CDD:COG5243" BASE COUNT 763 a 846 c 871 g 709 t ORIGIN 1 gaatcccgat ggagcggccc gaggaaggca agcagtcgcc gccgccgcag ccctggggac 61 ggctcctgcg tctgggcgcg gaggagggcg agccgcacgt cctcctgagg aagcgggagt 121 ggaccatcgg gcggagacga ggttgcgacc tttccttccc cagcaataaa ctggtctctg 181 gagatcactg tagaattgta gtggatgaaa aatcaggtca ggtgacactg gaagatacca 241 gcaccagtgg aacagtgatt aacaagctga aggttgttaa gaagcagaca tgccctttac 301 agactgggga tgtcatctac ttggtgtaca ggaagaatga accggaacac aacgtggcat 361 acctctatga atctttaagt gaaaagcaag gcatgacaca agaatccttt gatacctcag 421 gtgcaggtgc agggcgaggg gccgatcccc gggtccctcc gtcgtcgccc gccactcagg 481 tgtgctttga ggaaccacag ccatcaacat cgacgtcaga cctcttcccc acagcctcgg 541 cctcttccac ggagccttct cctgcagggc gagagcgttc ctccagttgt gggtctgggg 601 gtggtggcat ctcccctaaa ggaagtggtc cctctgtggc aagtgatgaa gtctccagct 661 ttgcctcagc tctcccagac agaaagactg cgtccttttc gtcgttggaa ccccaggatc 721 aggaggattt ggagcccgtg aagaagaaaa tgagaggaga tggggacctt gacctgaacg 781 ggcagttgtt ggtcgcacaa ccgcgtagaa atgcccaaac cgtccacgag gacgtcagag 841 cagcggctgg gaagccagac aagatggagg agacgctgac atgcatcatc tgccaggacc 901 tgctgcacga ctgcgtgagt ttgcagccct gcatgcacac gttctgcgcg gcttgctact 961 cgggctggat ggagcgctcg tccctgtgtc ctacctgccg ctgtcccgtg gagcggatct 1021 gtaaaaacca catcctcaac aacctcgtgg aagcatacct catccagcat ccagacaaga 1081 gtcgcagtga agaagatgtg caaagtatgg atgccaggaa taaaatcact caagacatgc 1141 tgcagcccaa agtcaggcgg tctttttctg atgaagaagg gagttcagag gacctgctgg 1201 agctgtcaga cgttgacagt gagtcctcag acattagcca gccatacgtc gtgtgccggc 1261 agtgtcctga gtacagaagg caggcggcgc agcctcccca ctgcccagca cccgagggcg 1321 agccaggagc cccacaggcc ctgggggatg caccctccac gtccgtcagc ctgacgacag 1381 cagtccagga ttacgtgtgc cctctgcaag gaagccacgc cctgtgcacc tgctgcttcc 1441 agcccatgcc cgaccggaga gtggagcgcg agcaggaccc gcgtgtcgcc cctcagcagt 1501 gtgcggtctg cctgcagcct ttctgccacc tgtactgggg ctgcacccgg accggctgct 1561 acggctgcct ggccccgttt tgtgagctca acctgggtga caagtgtctg gacggcgtgc 1621 tgaacaacaa cagctacgag tcagacatcc tgaagaatta cctggcaacc agaggtttga 1681 catggaaaaa catgttgacc gagagcctcg tggctctcca gcggggagtg tttctgctgt 1741 ctgattacag agtcacggga gacaccgttc tgtgttactg ctgtggcctg cgcagcttcc 1801 gtgagctgac ctatcagtat cggcagaaca ttcctgcttc cgagttgcca gtggccgtaa 1861 catcccgtcc tgactgctac tggggccgta actgccgcac tcaggtgaaa gctcaccacg 1921 ccatgaaatt caatcatatc tgtgaacaga caaggttcaa aaactaagca tccagaggcc 1981 ctgagcagct ttcagcactg gaggtgaaga gagcgtgttt ttaaaataca gagacaagca 2041 cgtcaaggtg ttttcacagc cccctgaggg aagggacgca gggtctccga caggtgctct 2101 ggggtgactc ttctgtggag ctttttaccc tctgagtgag accctcccca gagccccggg 2161 ggccgcagcc cgccctcctg gtgagcgctg ggcagggctc atggtggcat cagcagcaga 2221 gacgaagcct ttctgtaaca tgcggccgtc ccgccgagag gggcagtttt gctcttttgt 2281 acattttccg aaactacagt taaagcagaa gtctgttttc aggaaaagtt tcaagggaga 2341 agggcaagtt tatcaaaaac attgtttcag gagaagggag cataagttta cagcctacag 2401 gacgtacaca atatcctgct gctgggaaaa ccacagcatt ttatctattt tttattttaa 2461 taggtttggt gcttatcttc taataagatt taaatgtcac aaactgtagc acaaataata 2521 taatttataa tttacaaatt gactaaaatt gggtatagta tggtatttga aagaataagc 2581 atatgcttct gtttattaaa aaaagaaacc ttccaatgtc caaaactgct aaccctcgac 2641 gtggccgcca agttagtcgc tccttgctaa ccggtgagtg accgcggccc cgagcctggg 2701 gctggacgca ggtcccagga catgctgctc ccttgtgtga gtgaccacgg ccccgagcct 2761 ggggctggac gcaggtccca ggacgtgctg ctcccttgtg tgagtgacca cggccccaag 2821 cccggggctg gaggcaggtc ccaggacgcg ccgctccctc atgctgcccg ggcccttcct 2881 ccaagaccct acagagcctg aggggcacct tggcttccgc ctgtgctagc tttgccatgt 2941 catctggaat aatacttgaa attttgattt ttggaaaaaa aagtttttta tcttttgttg 3001 aaatcacctg ttatccttgt ttgtaaactg ataacttttt tgcttcttct caggaataca 3061 gttttcaact gttgtcttgc tcttgataga aactgagaag cagcaatctg tatttgtgga 3121 ggaaagtcct ctcttttgca tattctaata aatgagccgc gtttgctcct caaaaaaaaa 3181 aaaaaaaaa //