LOCUS BC012040 2124 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens DEP domain containing 6, mRNA (cDNA clone MGC:9757
IMAGE:3855457), complete cds.
ACCESSION BC012040
VERSION BC012040.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2124)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2124)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 13 Row: c Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 12232472.
FEATURES Location/Qualifiers
source 1..2124
/db_xref="H-InvDB:HIT000035614"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9757 IMAGE:3855457"
/tissue_type="Colon, adenocarcinoma"
/clone_lib="NIH_MGC_65"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2124
/gene="DEPDC6"
/gene_synonym="DEP.6"
/gene_synonym="DKFZp564B1778"
/gene_synonym="FLJ12428"
/gene_synonym="FLJ13854"
/db_xref="GeneID:64798"
/db_xref="HGNC:HGNC:22953"
CDS 37..1266
/gene="DEPDC6"
/gene_synonym="DEP.6"
/gene_synonym="DKFZp564B1778"
/gene_synonym="FLJ12428"
/gene_synonym="FLJ13854"
/codon_start=1
/product="DEP domain containing 6"
/protein_id="AAH12040.1"
/db_xref="GeneID:64798"
/db_xref="HGNC:HGNC:22953"
/translation="MEEGGSTGSAGSDSSTSGSGGAQQRELERMAEVLVTGEQLRLRL
HEEKVIKDRRHHLKTYPNCFVAKELIDWLIEHKEASDRETAIKLMQKLADRGIIHHVC
DEHKEFKDVKLFYRFRKDDGTFPLDNEVKAFMRGQRLYEKLMSPENTLLQPREEEGVK
YERTFMASEFLDWLVQEGEATTRKEAEQLCHRLMEHGIIQHVSSKHPFVDSNLLYQFR
MNFRRRRRLMELLNEKSPSSQETHDSPFCLRKQSHDNRKSTSFMSVSPSKEIKIVSAV
RRSSMSSCGSSGYFSSSPTLSSSPPVLCNPKSVLKRPVTSEELLTPGAPYARKTFTIV
GDAVGWGFVVRGSKPCHIQAVDPSGPAAAAGMKVCQFVVSVNGLNVLHVDYRTVNNLI
LTGPRTIVMEVMEELEC"
BASE COUNT 633 a 460 c 522 g 509 t
ORIGIN
1 cagcggagcc agtggtagcc gcacggccct aaaaccatgg aggagggcgg cagcactggc
61 agtgctggca gtgacagcag caccagcggg agtggcgggg cgcagcaaag ggagctggag
121 cgcatggctg aggtcttggt caccggggaa cagctacggc tcaggctgca cgaagaaaag
181 gttattaaag atagacgtca tcatctcaag acctacccaa actgttttgt cgcaaaagaa
241 ctgattgact ggctgattga acacaaagag gcttctgaca gagagacggc aattaaactc
301 atgcagaaat tagcagaccg gggcattatt caccatgtgt gtgatgagca taaggaattc
361 aaggatgtca aactcttcta ccgctttaga aaggatgacg gcaccttccc attggataat
421 gaagtgaagg cctttatgag aggacagagg ctatatgaaa agctgatgag ccctgaaaac
481 acactcctgc agcccaggga ggaggaaggg gtcaagtatg agcgcacctt catggcatct
541 gaattcctgg actggctggt tcaggaaggt gaggccacca cgaggaaaga ggcagagcag
601 ctttgccacc ggcttatgga gcatggcatc atccagcatg tgtccagcaa gcacccattt
661 gtggacagca atcttctcta ccagttcaga atgaacttcc ggcggaggcg aagactgatg
721 gagctgctca atgaaaagtc cccctcctcc caggaaactc atgacagtcc cttctgcctg
781 aggaagcaga gccatgacaa tcggaaatct accagcttta tgtcagtgag ccccagcaag
841 gagatcaaga tcgtgtctgc agtgaggaga agcagcatga gcagctgtgg cagcagcggc
901 tacttcagca gcagccccac cctcagcagc agcccccctg tgctctgcaa ccccaagtcc
961 gtgctgaaga gacctgtcac ctctgaggaa ctccttactc ccggggctcc gtatgcaagg
1021 aagacattca cgattgttgg tgacgcggtt ggctggggtt ttgtggtgcg aggaagtaag
1081 ccatgccaca tccaggctgt agaccccagt ggccctgcag ccgcagcagg aatgaaggtc
1141 tgtcagtttg tcgtctctgt caacgggctc aatgtcctgc atgtagacta ccggaccgtg
1201 aacaatctga ttctgacggg cccacggacg attgtcatgg aagtcatgga ggagttagag
1261 tgctgagctc ctgggcctcc cagccctcca gtggcctgtg ggtgagggaa gccagaatga
1321 cacaaagcaa tgcaaagaca agattgccat gcaaatggat ggttttggac atacgagtct
1381 tctccgcaca tacatgtctg aagttgagtt ttatacactg aatgtggaag aaccgggtat
1441 catatctttt ttaaaaaatg tcagtgtaga aaacatttgg gaaaccattt tcctacatga
1501 tagaactgcc ttactagatt tctatttgta gctctcattc attgtttttt atcttagttt
1561 gcagaaaggt gttgaaatgc ttctctagcc caaacagcga catgctaaag tccccttctt
1621 cagagtcaat agagtagttg ttaaaggttt taaattgtac tttctccaaa attagcatgc
1681 agctatttaa tagggaatct agatttcacc aagattcaaa tcaaagcaac atttaaagga
1741 ataagacctg ttcactagca ttttcaaggg ggttctaaag cattcaagtg cttaaaagcc
1801 ataaaaaatg acttcttaat tcctgccttt agtgtcaact tttaagttaa tacaggtttc
1861 aattgtggca ttaggaaaaa aaaaaacctt gtgatgctat ggttgggggt agttagggag
1921 agactacatg aaattgtgtg cccctatttt ctttctgatc ctaaatcatt ttgttttata
1981 aatcagctat agcatctttc tagaattaat cctgaatatg ttgaatgtta aaatagagaa
2041 gtttgtatat acacataatt aaaaatcaac ccttctggca agaaaaaaaa aaaaaaaaaa
2101 aaaaaaaaaa aaaaaaaaaa aaaa
//