LOCUS BC011986 1122 bp mRNA linear HUM 04-OCT-2003
DEFINITION Homo sapiens TAF12 RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 20kDa, mRNA (cDNA clone MGC:9172
IMAGE:3882343), complete cds.
ACCESSION BC011986
VERSION BC011986.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1122)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1122)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 21 Row: o Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 9943840.
FEATURES Location/Qualifiers
source 1..1122
/db_xref="H-InvDB:HIT000035584"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9172 IMAGE:3882343"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_68"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1122
/gene="TAF12"
/gene_synonym="TAF2J"
/gene_synonym="TAFII20"
/db_xref="GeneID:6883"
/db_xref="MIM:600773"
CDS 436..921
/gene="TAF12"
/gene_synonym="TAF2J"
/gene_synonym="TAFII20"
/codon_start=1
/product="TAF12 protein"
/protein_id="AAH11986.1"
/db_xref="GeneID:6883"
/db_xref="MIM:600773"
/translation="MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTP
GAGGRLSPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQL
ARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTK
K"
misc_feature 610..813
/gene="TAF12"
/gene_synonym="TAF2J"
/gene_synonym="TAFII20"
/note="TFIID_A; Region: Transcription initiation factor
TFIID subunit A"
/db_xref="CDD:pfam03847"
BASE COUNT 338 a 244 c 315 g 225 t
ORIGIN
1 agacgctgct gcctgtgagt cttgggccct ggcagttgag gaacaagagc gggaggaggg
61 agtcaggacc cagacctaca gtgggtcagt gttcgaagga ccaggttgtg gacgagacgg
121 ggctgtgagg attcaggctc ttgggaaggg actgactgag aggatcaggc tcggagaaga
181 cgcggctgtg gggacccggg ctccaagacg ggacttaggg aacggggacg gatccgagtt
241 ctccggcatc tgagggaaag tggtctgaga ggagcaggat tatgaggacc cgcactccta
301 cgaggaaagg gtcagaaagg aacggggcgt gaagacacag gctccggaga gttaattggc
361 cttggtcctc acagctccaa aaagaaacag gatctcgata agctctatga gctgaagtcc
421 aaagctcggc agattatgaa ccagtttggc ccctcagccc taatcaacct ctccaatttc
481 tcatccataa aaccggaacc agccagcacc cctccacaag gctccatggc caatagtact
541 gcagtggtaa agataccagg cactcctggg gcaggaggtc gtcttagccc tgaaaacaat
601 caggtattga ccaagaagaa attacaggac ttagtaagag aagtggatcc taatgagcag
661 ttggatgaag atgtggagga gatgctgctg cagattgctg atgattttat cgagagtgtg
721 gtgacagcag cctgtcagct tgcgcggcat cgcaagtcta gcaccctgga ggtgaaagat
781 gtccagctgc atttagagcg ccagtggaac atgtggatcc caggatttgg ctctgaagaa
841 atccgaccct acaaaaaagc ttgcaccaca gaagctcaca aacagagaat ggcattgatc
901 cggaaaacaa ccaagaaata acacacggaa aggtcaggga atggacagca atgtatttgg
961 agatacttga gctgagaact cagccatctc atccttggat tttttttttt aatgctttac
1021 agagaagcat atatttttta ttaacagtgc agcaatatct ataatgactg agaggatctg
1081 ccaaaagaat aaagcctcct accccaaaaa aaaaaaaaaa aa
//