LOCUS BC011892 2291 bp mRNA linear HUM 04-OCT-2003 DEFINITION Homo sapiens cofactor of BRCA1, mRNA (cDNA clone MGC:19886 IMAGE:3941719), complete cds. ACCESSION BC011892 VERSION BC011892.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2291) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2291) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 28 Row: g Column: 8 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 20070259. FEATURES Location/Qualifiers source 1..2291 /db_xref="H-InvDB:HIT000035521" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:19886 IMAGE:3941719" /tissue_type="Lung, small cell carcinoma" /clone_lib="NIH_MGC_7" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2291 /gene="COBRA1" /gene_synonym="DKFZP586B0519" /gene_synonym="NELF-B" /gene_synonym="NELFB" /db_xref="GeneID:25920" CDS 235..1662 /gene="COBRA1" /gene_synonym="DKFZP586B0519" /gene_synonym="NELF-B" /gene_synonym="NELFB" /codon_start=1 /product="COBRA1 protein" /protein_id="AAH11892.1" /db_xref="GeneID:25920" /translation="MPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQI WQDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQRLTRM VGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVGEICTVDPCHKFTWC LDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLALSTVRHLQ ELVGQETLPRDSPDLLLLLRLLALGQGAWDMIDSQVFKEPKMEVELITRFLPMLMSFL VDDYTFNVDQKLPAEEKAPVSYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKN ALLRLLPGLVETFGDLAFGDIFLHLLTGNLALLADEFALEDFCSSLFDGFFLTASPRK ENVHRHALRLLIHLHPRVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLDHRK PSPAQAAETPALELPLPSVPAPAPL" BASE COUNT 438 a 683 c 720 g 450 t ORIGIN 1 ggcacgaggg agcagttcca gacagagaat ggtgtgctgc tgccatctct tcagtcagcc 61 ctccccttct tggacctgca cgggacgccg cggctggagt tccaccagtc ggtattcgat 121 gagctgcggg acaagctgct ggagcgagtg tcagccatcg cttcggaggg gaaggctgag 181 gaaaggtaca agaagctgga agaccttctg gagaagagct tttctctggt gaagatgccg 241 tccctgcagc ccgtggtgat gtgcgtcatg aagcacctgc ccaaggttcc ggagaaaaaa 301 ctgaagctgg ttatggctga caaggagctg tatcgagcct gcgccgtgga ggtgaagcgg 361 cagatctggc aagacaacca ggccctcttc ggggacgagg tttccccact cctgaagcag 421 tacatcctgg agaaggagag cgctctcttc agtacagagc tctctgtcct gcacaacttt 481 ttcagtcctt cccccaagac caggcgccag ggcgaggtgg tgcagcggct gacgcggatg 541 gtggggaaga acgtgaagct gtacgacatg gtgctgcagt ttctgcgcac gctcttcctg 601 cgcacgcgga atgtgcacta ctgcacgctg cgggctgagc tgctcatgtc cctgcacgac 661 ctggacgtgg gtgaaatctg caccgtggac ccgtgccaca agttcacctg gtgcctggac 721 gcctgcatcc gagagcggtt cgtggacagc aagagggcgc gggagctgca ggggtttctc 781 gatggcgtca agaagggcca ggagcaggtg ctgggggacc tgtccatgat cctgtgtgac 841 cccttcgcca tcaacacgct ggcactgagc acagtcaggc acctgcagga gctggtcggc 901 caggagacac tgcccaggga cagccccgac ctcctgctgc tgctccggct gctggcgctg 961 ggccagggag cctgggacat gatcgacagc caggtcttca aggagcccaa gatggaggta 1021 gagctcatca ccaggttcct cccgatgctc atgtccttcc tggtggatga ctacactttc 1081 aatgtggatc agaaacttcc ggctgaggag aaagccccag tctcatatcc aaacacactt 1141 cccgaaagct tcactaagtt tctgcaggag cagcgcatgg cctgcgaggt ggggctgtac 1201 tacgtcctgc acatcaccaa gcagaggaac aagaacgcgc tcctccgcct gctgcccggg 1261 ctggtggaga cctttggcga cttggccttt ggcgacatct tcctccacct gctcacgggc 1321 aaccttgcgc tgctggccga cgaatttgcc cttgaggact tctgcagcag cctcttcgat 1381 ggcttcttcc tcaccgcctc tccaaggaag gagaacgtgc accggcacgc gctgcggctc 1441 ctcattcacc tgcaccccag ggtggcccca tctaagctgg aggcgttgca gaaggccctg 1501 gagcctacag gccagagcgg agaggcagtg aaggagcttt actcccagct cggcgagaag 1561 ctggaacagc tggatcaccg gaagcccagc ccggcacagg ctgcggagac gccggccctg 1621 gagctgcccc tccccagcgt gcccgcccct gccccgctct gagggccctc cagacctgct 1681 cgggtgctgg ggccatgccg agtcgcggcc ctgctcagcc ggaagaggct cccggacctg 1741 gatgtacagg gcagtctctc ttcccggggc tatggctggg cctgtcctgc cgtcatggcc 1801 ccctgcttcc tgctccttgg agctggctcc cggaccttgc ccaccatcca tgcagtggct 1861 cccagggcag agcctctcct tgtactttgg cagccataga aagcgtgctc attttctgtt 1921 ttcctgtgtt aggaaaaaac cacctgtttt ccaaggggag agggcggggc ctgagggtgg 1981 gggcggggcc tcttcattgg cccagcttgg cgaaagcgag gcacactgct tactgccttg 2041 gggttgtgga gatggacccg tgacctcgtg gaggccgtgt gggggcagca gcctggcctg 2101 tgccatggtg ggtgtcctgg ggcctgtgcg gagggagcca cctcaccctg cagcccaggt 2161 tgcaggtgtg gccttgtttc tccttgccca gcagtgctgc cttcagcggc cgtgacgggg 2221 ccagctggac acacggtgag attttctcgt atgtaaataa aaggcaattt ggtaaaaaaa 2281 aaaaaaaaaa a //