LOCUS BC011844 2282 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens tumor necrosis factor receptor superfamily, member 1B,
mRNA (cDNA clone IMAGE:4111730), partial cds.
ACCESSION BC011844
VERSION BC011844.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2282)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2282)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC011844.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 28 Row: i Column: 15.
FEATURES Location/Qualifiers
source 1..2282
/db_xref="H-InvDB:HIT000087723"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4111730"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2282
/gene="TNFRSF1B"
/gene_synonym="CD120b"
/gene_synonym="p75"
/gene_synonym="p75TNFR"
/gene_synonym="TBPII"
/gene_synonym="TNF-R-II"
/gene_synonym="TNF-R75"
/gene_synonym="TNFBR"
/gene_synonym="TNFR2"
/gene_synonym="TNFR80"
/db_xref="GeneID:7133"
/db_xref="MIM:191191"
CDS <1..1375
/gene="TNFRSF1B"
/gene_synonym="CD120b"
/gene_synonym="p75"
/gene_synonym="p75TNFR"
/gene_synonym="TBPII"
/gene_synonym="TNF-R-II"
/gene_synonym="TNF-R75"
/gene_synonym="TNFBR"
/gene_synonym="TNFR2"
/gene_synonym="TNFR80"
/codon_start=2
/product="TNFRSF1B protein"
/protein_id="AAH11844.1"
/db_xref="GeneID:7133"
/db_xref="MIM:191191"
/translation="RAQRSLERRRWAARARGREGRGQPDPARTHGARRRLGRAGRRTG
ALGCGARLARPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVE
TQACTREQNRICTCRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPC
APGTFSNTTSSTDICRPHQICNVVAIPGNASMDAVCTSTSPTRSMAPGAVHLPQPVST
RSQHTQPTPEPSTAPSTSFLLPMGPSPPAEGSTGDFALPVGLIVGVTALGLLIIGVVN
CVIMTQVKKKPLCLQREAKVPHLPADKARGTQGPEQQHLLITAPSSSSSSLESSASAL
DRRAPTRNQPQAPGVEASGAGEARASTGSSDSSPGGHGTQVNVTCIVNVCSSSDHSSQ
CSSQASSTMGDTDSSPSESPKDEQVPFSKEECAFRSQLETPETLLGSTEEKPLPLGVP
DAGMKPS"
misc_feature 221..343
/gene="TNFRSF1B"
/gene_synonym="CD120b"
/gene_synonym="p75"
/gene_synonym="p75TNFR"
/gene_synonym="TBPII"
/gene_synonym="TNF-R-II"
/gene_synonym="TNF-R75"
/gene_synonym="TNFBR"
/gene_synonym="TNFR2"
/gene_synonym="TNFR80"
/note="TNFR_c6; Region: TNFR/NGFR cysteine-rich region"
/db_xref="CDD:pfam00020"
misc_feature 347..472
/gene="TNFRSF1B"
/gene_synonym="CD120b"
/gene_synonym="p75"
/gene_synonym="p75TNFR"
/gene_synonym="TBPII"
/gene_synonym="TNF-R-II"
/gene_synonym="TNF-R75"
/gene_synonym="TNFBR"
/gene_synonym="TNFR2"
/gene_synonym="TNFR80"
/note="TNFR; Region: Tumor necrosis factor receptor /
nerve growth factor receptor repeats. Repeats in growth
factor receptors that are involved in growth factor
binding. TNF/TNFR"
/db_xref="CDD:smart00208"
BASE COUNT 459 a 706 c 708 g 409 t
ORIGIN
1 gcgagcgcag cggagcctgg agagaaggcg ctgggctgcg agggcgcgag ggcgcgaggg
61 cagggggcaa ccggaccccg cccgcaccca tggcgcccgt cgccgtctgg gccgcgctgg
121 ccgtcggact ggagctctgg gctgcggcgc acgccttgcc cgcccaggcc aacatgcaaa
181 agtcttctgt accaagacct cggacaccgt gtgtgactcc tgtgaggaca gcacatacac
241 ccagctctgg aactgggttc ccgagtgctt gagctgtggc tcccgctgta gctctgacca
301 ggtggaaact caagcctgca ctcgggaaca gaaccgcatc tgcacctgca ggcccggctg
361 gtactgcgcg ctgagcaagc aggaggggtg ccggctgtgc gcgccgctgc gcaagtgccg
421 cccgggcttc ggcgtggcca gaccaggaac tgaaacatca gacgtggtgt gcaagccctg
481 tgccccgggg acgttctcca acacgacttc atccacggat atttgcaggc cccaccagat
541 ctgtaacgtg gtggccatcc ctgggaatgc aagcatggat gcagtctgca cgtccacgtc
601 ccccacccgg agtatggccc caggggcagt acacttaccc cagccagtgt ccacacgatc
661 ccaacacacg cagccaactc cagaacccag cactgctcca agcacctcct tcctgctccc
721 aatgggcccc agccccccag ctgaagggag cactggcgac ttcgctcttc cagttggact
781 gattgtgggt gtgacagcct tgggtctact aataatagga gtggtgaact gtgtcatcat
841 gacccaggtg aaaaagaagc ccttgtgcct gcagagagaa gccaaggtgc ctcacttgcc
901 tgccgataag gcccggggta cacagggccc cgagcagcag cacctgctga tcacagcgcc
961 gagctccagc agcagctccc tggagagctc ggccagtgcg ttggacagaa gggcgcccac
1021 tcggaaccag ccacaggcac caggcgtgga ggccagtggg gccggggagg cccgggccag
1081 caccgggagc tcagattctt cccctggtgg ccatgggacc caggtcaatg tcacctgcat
1141 cgtgaacgtc tgtagcagct ctgaccacag ctcacagtgc tcctcccaag ccagctccac
1201 aatgggagac acagattcca gcccctcgga gtccccgaag gacgagcagg tccccttctc
1261 caaggaggaa tgtgcctttc ggtcacagct ggagacgcca gagaccctgc tggggagcac
1321 cgaagagaag cccctgcccc ttggagtgcc tgatgctggg atgaagccca gttaaccagg
1381 ccggtgtggg ctgtgtcgta gccaaggtgg gctgagccct ggcaggatga ccctgcgaag
1441 gggccctggt ccttccaggc ccccaccact aggactctga ggctctttct gggccaagtt
1501 cctctagtgc cctccacagc cgcagcctcc ctctgacctg caggccaaga gcagaggcag
1561 cgagttgtgg aaagcctctg ctgccatggt gtgtccctct cggaaggctg gctgggcatg
1621 gacgttcggg gcatgctggg gcaagtccct gactctctgt gacctgcccc gcccagctgc
1681 acctgccagc ctggcttctg gagcccttgg gttttttgtt tgtttgtttg tttgtttgtt
1741 tgtttctccc cctgggctct gccccagctc tggcttccag aaaaccccag catccttttc
1801 tgcagagggg ctttctggag aggagggatg ctgcctgagt cacccatgaa gacaggacag
1861 tgcttcagcc tgaggctgag actgcgggat ggtcctgggg ctctgtgcag ggaggaggtg
1921 gcagccctgt agggaacggg gtccttcaag ttagctcagg aggcttggaa agcatcacct
1981 caggccaggt gcagtggctc acgcctatga tcccagcact ttgggaggct gaggcgggtg
2041 gatcacctga ggttaggagt tcgagaccag cctggccaac atggtaaaac cccatctcta
2101 ctaaaaatac agaaattagc cgggcgtggt ggcgggcacc tatagtccca gctactcaga
2161 agcctgaggc tgggaaatcg tttgaacccg ggaagcggag gttgcaggga gccgagatca
2221 cgccactgca ctccagcctg ggcgacagag cgagagtctg tctcaaaaaa aaaaaaaaaa
2281 aa
//