LOCUS BC011806 1774 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens pleckstrin homology domain containing, family F (with
FYVE domain) member 2, mRNA (cDNA clone MGC:19473 IMAGE:4335031),
complete cds.
ACCESSION BC011806
VERSION BC011806.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1774)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1774)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC011806.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: p Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31543413.
FEATURES Location/Qualifiers
source 1..1774
/db_xref="H-InvDB:HIT000035464"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:19473 IMAGE:4335031"
/tissue_type="Primary B-Cells from Tonsils"
/clone_lib="NIH_MGC_48"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1774
/gene="PLEKHF2"
/gene_synonym="FLJ13187"
/gene_synonym="PHAFIN2"
/gene_synonym="ZFYVE18"
/db_xref="GeneID:79666"
/db_xref="HGNC:HGNC:20757"
CDS 225..974
/gene="PLEKHF2"
/gene_synonym="FLJ13187"
/gene_synonym="PHAFIN2"
/gene_synonym="ZFYVE18"
/codon_start=1
/product="pleckstrin homology domain containing, family F
(with FYVE domain) member 2"
/protein_id="AAH11806.1"
/db_xref="GeneID:79666"
/db_xref="HGNC:HGNC:20757"
/translation="MVDRLANSEANTRRISIVENCFGAAGQPLTIPGRVLIGEGVLTK
LCRKKPKARQFFLFNDILVYGNIVIQKKKYNKQHIIPLENVTIDSIKDEGDLRNGWLI
KTPTKSFAVYAATATEKSEWMNHINKCVTDLLSKSGKTPSNEHAAVWVPDSEATVCMR
CQKAKFTPVNRRHHCRKCGFVVCGPCSEKRFLLPSQSSKPVRICDFCYDLLSAGDMAT
CQPARSDSYSQSLKSPLNDMSDDDDDDDSSD"
BASE COUNT 500 a 346 c 395 g 533 t
ORIGIN
1 ggaggggcgg gggagtcacc tgcgagcggc tgcgctggcg gccagcccgc ccaccgcgtc
61 tggatcgcgc cggctgcgcg gggctgcgga cagcacacac cctggaaggc cccggcgggg
121 aacgggcaga gtccgcgccc tgcgtccgcg accaggagga tcggaccttc gccttcgctg
181 tcgccgccgc cgccgcccgc ggccgtcggg gctattagtg aaagatggtg gatcgcttgg
241 caaacagtga agcaaatact agacgtataa gtatagtgga aaactgtttt ggagcagctg
301 gtcaaccttt aactatacct ggacgagttc ttattggaga aggagtattg actaagttgt
361 gcaggaaaaa gcccaaagca aggcagtttt tcttgtttaa tgatattctt gtatatggca
421 atattgtcat ccagaagaaa aaatataaca aacaacatat tattcccctg gaaaatgtca
481 ctattgattc catcaaagat gagggagact taaggaatgg atggctaatc aagacaccaa
541 ctaaatcttt tgcagtttat gctgccactg ctacggagaa atcagaatgg atgaatcata
601 taaataaatg tgttactgat ttactctcca aaagtgggaa gacacccagt aatgaacatg
661 ctgctgtctg ggttcctgac tctgaggcaa ctgtatgtat gcgttgtcag aaagcaaaat
721 tcacacctgt taatcgtcgc caccattgcc gcaaatgtgg ttttgttgtc tgtgggccct
781 gctctgaaaa gagatttctt cttcccagcc agtcctctaa gcctgtgcgg atttgtgact
841 tctgctatga cctgctttct gctggggaca tggccacatg ccagcctgct agatcagact
901 cttacagcca gtcattgaag tctcctttaa atgatatgtc tgatgatgat gacgatgatg
961 atagcagtga ctaaggacac atttgggagt atttaatcag gtgtggctat ctgagaaatc
1021 aactttgggg gaaatgtaag attctgagct ctctctctgt tttgttctag ccatgaattt
1081 gcctgagaaa cttgtaacct atgtgcctca atatattcca tagaaagtag gtccccctgc
1141 cttctcccac tcctcacact cttctacagg gataggcttt tgcaaatata tcagataaat
1201 tttttgtttc ttgtttattt ttaggttatt ttcttggaag gttgggaaaa gatgtttgtt
1261 ttaacaggtc atgtactacg ttgttgtttt catttctgtt ataagtaaaa ctaaaagcac
1321 agaatggtgg gaaaggggct ataatgtggt tcattaataa tgttagcagc ttttttctaa
1381 ccatcctgtc taatggttaa gacaccagta acaaaaacac atgatttgga aatactttgg
1441 ctttttcata tacctagtgg tgccttatca taatagcact gttacatgaa ataagcccct
1501 accttcttac tttctggttt gttgaaaaaa tacactggtg ctctttgaag tgataaaatg
1561 agtgtttatg aatgggtgta attaggaaat acttctcatc tgacagctac aaataactaa
1621 gtttggaggt attttcactc tatatgaata aatatttttc cataaaatag ttgtgattat
1681 atttttgttt tatataggtc ccaaattata attgtcaaat atatatttta aattaataaa
1741 agttgtcatt cttaggaaaa aaaaaaaaaa aaaa
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