LOCUS BC011788 1286 bp mRNA linear HUM 11-SEP-2007 DEFINITION Homo sapiens PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae), mRNA (cDNA clone IMAGE:4026200), partial cds. ACCESSION BC011788 VERSION BC011788.2 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1286) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1286) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC011788.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 27 Row: l Column: 16 This clone was selected for full length sequencing because it passed the following selection criteria: Similarity but not identity to protein. FEATURES Location/Qualifiers source 1..1286 /db_xref="H-InvDB:HIT000087705" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4026200" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_20" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..>1286 /gene="PRPF40A" /gene_synonym="FBP-11" /gene_synonym="FBP11" /gene_synonym="FLAF1" /gene_synonym="HIP10" /gene_synonym="HYPA" /gene_synonym="NY-REN-6" /db_xref="GeneID:55660" /db_xref="HGNC:HGNC:16463" CDS 52..>1286 /gene="PRPF40A" /gene_synonym="FBP-11" /gene_synonym="FBP11" /gene_synonym="FLAF1" /gene_synonym="HIP10" /gene_synonym="HYPA" /gene_synonym="NY-REN-6" /codon_start=1 /product="PRPF40A protein" /protein_id="AAH11788.1" /db_xref="GeneID:55660" /db_xref="HGNC:HGNC:16463" /translation="MRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHGMMP QMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASGAKS MWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNS QTKESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSTAPVP TTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVSGTVPVVPEPEV TSIVATVVDNENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQETVADFTPKK EEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKL SEKKQAFNAYKVQTKKKKK" BASE COUNT 429 a 282 c 300 g 275 t ORIGIN 1 gttggtatgt gtagcggcag tggccgccgg cggagcagtc tgagcccgac gatgaggccg 61 gggacgggag ctgagcgtgg aggcctcatg atggggcacc ctggcatgca ttatgcccca 121 atgggaatgc accctatggg tcagagagcg aatatgcctc ctgtacctca tggaatgatg 181 ccgcagatga tgccccctat gggagggcca ccaatgggac aaatgcctgg aatgatgtcg 241 tcagtaatgc ctggaatgat gatgtctcat atgtctcagg cttccatgca gcctgcctta 301 ccgccaggag taaatagtat ggatgtagca gcaggtacag catctggtgc aaaatcaatg 361 tggactgaac ataaatcacc tgatggaagg acttactact acaacactga aaccaaacag 421 tctacctggg agaaaccaga tgatcttaaa acacctgctg agcaactctt atctaaatgc 481 ccctggaagg aatacaaatc agattctgga aagccttact attataattc tcaaacaaaa 541 gaatctcgct gggccaaacc taaagaactt gaggatcttg aaggatacca gaataccatt 601 gttgctggaa gtcttattac aaaatcaaac ctgcatgcaa tgatcaaagc tgaagaaagc 661 agtaagcaag aagagtgcac cacaacatca acagccccag tccctacaac agaaattccg 721 accacaatga gcaccatggc tgctgccgaa gcagcagctg ctgttgttgc agcagcagca 781 gcggcagcag cagcagcagc tgcagccaat gctaatgctt ccacttctgc ttctaatact 841 gtcagtggaa ctgttccagt tgttcctgag cctgaagtta cttccattgt tgctactgtt 901 gtagataatg agaatacagt aactatttca actgaggaac aagcacaact tactagtacc 961 cctgctattc aggatcaaag tgtggaagta tccagtaata ctggagaaga aacatctaag 1021 caagaaactg tagctgattt tactcccaaa aaagaagagg aggagagcca accagcaaag 1081 aaaacataca cttggaatac aaaggaagag gcaaagcaag cttttaaaga attattgaaa 1141 gaaaagcggg taccatcgaa tgcttcatgg gagcaggcta tgaaaatgat tattaatgat 1201 ccacgataca gtgctttggc aaagttaagt gaaaaaaagc aagcctttaa tgcctataaa 1261 gtccagacaa aaaaaaaaaa aaaaaa //