LOCUS BC011774 953 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens matrix metallopeptidase 28, mRNA (cDNA clone
IMAGE:3641019), complete cds.
ACCESSION BC011774
VERSION BC011774.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 953)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 953)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC011774.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: h Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34335243
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..953
/db_xref="H-InvDB:HIT000035442"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3641019"
/tissue_type="Pancreas, adenocarcinoma"
/clone_lib="NIH_MGC_39"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..953
/gene="MMP28"
/gene_synonym="MM28"
/gene_synonym="MMP25"
/db_xref="GeneID:79148"
/db_xref="HGNC:HGNC:14366"
/db_xref="MIM:608417"
CDS 171..563
/gene="MMP28"
/gene_synonym="MM28"
/gene_synonym="MMP25"
/codon_start=1
/product="matrix metallopeptidase 28"
/protein_id="AAH11774.1"
/db_xref="GeneID:79148"
/db_xref="HGNC:HGNC:14366"
/db_xref="MIM:608417"
/translation="MVARVGLLLRALQLLLWGHLDAQPAERGGQELRKEAEAFLEKYG
YLNEQVPKAPTSTRFSDAIRAFQWVSQLPVSGVLDRATLRQMTRPRCGVTDTNSYAAW
AERISDLFARHRTKMRRKKRFAKQGEHC"
BASE COUNT 237 a 250 c 259 g 207 t
ORIGIN
1 gagcggccca gagcgcgcag ctagggcact ggcgaaaccc cgggacagtc cctctccgtg
61 cgggggcggc gcagagcagt cccatccccg gggtcccggg cgcggctgac tgccggctgg
121 ttccctgcgc gcagtagctc cccgagccgg gctgcaccgg aggcggcgag atggtcgcgc
181 gcgtcggcct cctgctgcgc gccctgcagc tgctactgtg gggccacctg gacgcccagc
241 ccgcggagcg cggaggccag gagctgcgca aggaggcgga ggcattccta gagaagtacg
301 gatacctcaa tgaacaggtc cccaaagctc ccacctccac tcgattcagc gatgccatca
361 gagcgtttca gtgggtgtcc cagctacctg tcagcggcgt gttggaccgc gccaccctgc
421 gccagatgac tcgtccccgc tgcggggtta cagataccaa cagttatgcg gcctgggctg
481 agaggatcag tgacttgttt gctagacacc ggaccaaaat gaggcgtaag aaacgctttg
541 caaagcaagg tgagcactgt taaaatccgg ctaggccaag atttcccaat gtcttgaagc
601 caatggctag gaaaacagct gagcctggga ctggactttg tcagtaacct ctcttcccta
661 gggcacggga ggagtgggtg aataggacct cttggcttga ggaccatgat tgtgaataca
721 gacatttaat tcagaatgac acctacattg atgaattttc attgtacaag tgtttttcca
781 gatcaaacac aaaacccatg taattccttg ataaattttc aatgcagggc agataaactg
841 ttgctaacat ttttcattta tatttactga agttattttc atcagaattc attctttttc
901 ataagttatt aaacaaatgt gtgatctatt gaaaaaaaaa aaaaaaaaaa aaa
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