LOCUS BC011727 1971 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens retinol dehydrogenase 11 (all-trans/9-cis/11-cis),
mRNA (cDNA clone MGC:19493 IMAGE:4135182), complete cds.
ACCESSION BC011727
VERSION BC011727.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1971)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1971)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC011727.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: n Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20070271.
FEATURES Location/Qualifiers
source 1..1971
/db_xref="H-InvDB:HIT000035405"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:19493 IMAGE:4135182"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1971
/gene="RDH11"
/gene_synonym="ARSDR1"
/gene_synonym="CGI-82"
/gene_synonym="FLJ32633"
/gene_synonym="HCBP12"
/gene_synonym="MDT1"
/gene_synonym="PSDR1"
/gene_synonym="RALR1"
/gene_synonym="SCALD"
/db_xref="GeneID:51109"
/db_xref="HGNC:HGNC:17964"
/db_xref="MIM:607849"
CDS 6..962
/gene="RDH11"
/gene_synonym="ARSDR1"
/gene_synonym="CGI-82"
/gene_synonym="FLJ32633"
/gene_synonym="HCBP12"
/gene_synonym="MDT1"
/gene_synonym="PSDR1"
/gene_synonym="RALR1"
/gene_synonym="SCALD"
/codon_start=1
/product="RDH11 protein"
/protein_id="AAH11727.1"
/db_xref="GeneID:51109"
/db_xref="HGNC:HGNC:17964"
/db_xref="MIM:607849"
/translation="MVELMFPLLLLLLPFLLYMAAPQIRKMLSSGVCTSTVQLPGKVV
VVTGANTGIGKETAKELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLS
DTKSIRAFAKGFLAEEKHLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTHLL
LEKLKESAPSRIVNVSSLAHHLGRIHFHNLQGEKFYNAGLAYCHSKLANILFTQELAR
RLKGSGVTTYSVHPGTVQSELVRHSSFMRWMWWLFSFFIKTPQQGAQTSLHCALTEGL
EILSGNHFSDCHVAWVSAQARNETIARRLWDVSCDLLGLPID"
BASE COUNT 620 a 436 c 449 g 466 t
ORIGIN
1 cagagatggt tgagctcatg ttcccgctgt tgctcctcct tctgcccttc cttctgtata
61 tggctgcgcc ccaaatcagg aaaatgctgt ccagtggggt gtgtacatca actgttcagc
121 ttcctgggaa agtagttgtg gtcacaggag ctaatacagg tatcgggaag gagacagcca
181 aagagctggc tcagagagga gctcgagtat atttagcttg ccgggatgtg gaaaaggggg
241 aattggtggc caaagagatc cagaccacga cagggaacca gcaggtgttg gtgcggaaac
301 tggacctgtc tgatactaag tctattcgag cttttgctaa gggcttctta gctgaggaaa
361 agcacctcca cgttttgatc aacaatgcag gagtgatgat gtgtccgtac tcgaagacag
421 cagatggctt tgagatgcac ataggagtca accacttggg tcacttcctc ctaacccatc
481 tgctgctaga gaaactaaag gaatcagccc catcaaggat agtaaatgtg tcttccctcg
541 cacatcacct gggaaggatc cacttccata acctgcaggg cgagaaattc tacaatgcag
601 gcctggccta ctgtcacagc aagctagcca acatcctctt cacccaggaa ctggcccgga
661 gactaaaagg ctctggcgtt acgacgtatt ctgtacaccc tggcacagtc caatctgaac
721 tggttcggca ctcatctttc atgagatgga tgtggtggct tttctccttt ttcatcaaga
781 ctcctcagca gggagcccag accagcctgc actgtgcctt aacagaaggt cttgagattc
841 taagtgggaa tcatttcagt gactgtcatg tggcatgggt ctctgcccaa gctcgtaatg
901 agactatagc aaggcggctg tgggacgtca gttgtgacct gctgggcctc ccaatagact
961 aacaggcagt gccagttgga cccaagagaa gactgcagca gactacacag tacttcttgt
1021 caaaatgatt ctccttcaag gttttcaaaa cctttagcac aaagagagca aaaccttcca
1081 gccttgcctg cttggtgtcc agttaaaact cagtgtactg ccagattcgt ctaaatgtct
1141 gtcatgtcca gatttacttt gcttctgtta ctgccagagt tactagagat atcataatag
1201 gataagaaga ccctcatatg acctgcacag ctcattttcc ttctgaaaga aactactacc
1261 taggagaatc taagctatag cagggatgat ttatgcaaat ttgaactagc ttctttgttc
1321 acaattcagt tcctcccaac caaccagtct tcacttcaag agggccacac tgcaacctca
1381 gcttaacatg aataacaaag actggctcag gagcagggct tgcccaggca tggtggatca
1441 ccggaggtca gtagttcaag accagcctgg ccaacatggt gaaaccccac ctctactaaa
1501 aattgtgtat atctttgtgt gtcttcctgt ttatgtgtgc caagggagta ttttcacaaa
1561 gttcaaaaca gccacaataa tcagagatgg agcaaaccag tgccatccag tctttatgca
1621 aatgaaatgc tgcaaaggga agcagattct gtatatgttg gtaactaccc accaagagca
1681 catgggtagc agggaagaag taaaaaaaga gaaggagaat actggaagat aatgcacaaa
1741 atgaagggac tagttaagga ttaactagcc ctttaaggat taactagtta aggattaata
1801 gcaaaagata ttaaatatgc taacatagct atggaggaat tgagggcaag cacccaggac
1861 tgatgaggtc ttaacaaaaa ccagtgtggc aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1921 aaaaaaaaaa aaaaaaaaaa aaaaatccta aaaacaaaaa aaaaaaaaaa a
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