LOCUS BC011716 1170 bp mRNA linear HUM 15-NOV-2004
DEFINITION Homo sapiens family with sequence similarity 54, member A, mRNA
(cDNA clone IMAGE:3926284), partial cds.
ACCESSION BC011716
VERSION BC011716.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1170)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1170)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Dec 19, 2003 this sequence version replaced BC011716.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: j Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..1170
/db_xref="H-InvDB:HIT000035398"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3926284"
/tissue_type="Ovary, adenocarcinoma"
/clone_lib="NIH_MGC_9"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1170
/gene="FAM54A"
/gene_synonym="DUFD1"
/db_xref="GeneID:113115"
CDS <1..907
/gene="FAM54A"
/gene_synonym="DUFD1"
/codon_start=2
/product="FAM54A protein"
/protein_id="AAH11716.2"
/db_xref="GeneID:113115"
/translation="DEEASYLRFRNSIWKNEEEKVEIFHPLRLVRDPLSPAVRQKETV
KNDLPVNEAAIRKIAALENELTFLRSQIAAIVEMQELKNSTNSSSFGLSDERISLGQL
SSSRAAHLSVDPDQLPGSVLSPPPPPPLPPQFSSLQPPCFPPVQPGSNNICDSDNPAT
EMSKQNPAANKTNYSHHSKSQRNKDIPNMLDVLKDMNKVKLRAIERSPGGRPIHKRKR
QNSHWDPVSLISHALKQKFAFQEDDSFEKENRSWESSPFSSPETSRFGHHISQSEGQR
TKEEMVNTKAVDQGISNTSLLNSRI"
BASE COUNT 380 a 234 c 214 g 342 t
ORIGIN
1 tgatgaagaa gccagttatc tcagatttcg aaatagtata tggaaaaatg aagaagagaa
61 agtggaaatt tttcatcctt tgcgactagt tcgggatcca ctgtcacctg ctgtaagaca
121 gaaagaaact gtgaaaaatg acctgcctgt aaatgaagct gcaattagaa aaatagctgc
181 ccttgaaaat gagctgactt ttcttcgctc tcagattgca gcaattgtgg aaatgcagga
241 actgaaaaat agtacaaatt ctagttcctt tggcttgagt gacgagcgca ttagtttggg
301 tcagctgtca tcatcgcggg ctgcccatct gagtgtggac ccagatcagc ttccaggttc
361 agtgctttct cctcctcctc ctccaccact tcctcctcag ttttcatctc tccagccacc
421 gtgttttcct cccgtacaac caggatctaa taatatttgt gactcagata atccagcaac
481 tgaaatgagc aaacagaacc cggctgctaa taagaccaat tatagtcatc attcaaaaag
541 ccagagaaat aaagatattc caaacatgtt ggacgttcta aaggatatga ataaggttaa
601 gcttcgtgca attgagcggt cacctggcgg tagacccatt cataagagga aaagacagaa
661 ttcacattgg gatccagttt ctttaatatc tcatgcactt aaacagaaat ttgcatttca
721 agaagatgat tcttttgaga aagagaatag atcttgggaa tcttccccat tttctagtcc
781 agaaacttca aggtttggac atcacatttc acagtcagaa ggacagcgaa ctaaagaaga
841 aatggtcaac acaaaagctg ttgaccaagg tatcagcaac acaagccttc taaactcaag
901 gatttaaact caacttaagg ttgagcttta aacttccaaa acttcttcct ggatgataaa
961 ttattcttag aaactgattt ggactgttaa aggctaaaag tagatgtatt taaagactct
1021 tcttgacaca ttttgcctac acttgctatg taaatatgta tgcctgtcat ttttgtttcc
1081 tttgttcctt tttacgttta tactctgttc ttctgtacat agagcttaaa ataaacattc
1141 tttttgaact tgaaaaaaaa aaaaaaaaaa
//