LOCUS BC011686 4196 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens damage-specific DNA binding protein 1, 127kDa, mRNA (cDNA clone MGC:19563 IMAGE:3845478), complete cds. ACCESSION BC011686 VERSION BC011686.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4196) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4196) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC011686.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 27 Row: i Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 13435358. FEATURES Location/Qualifiers source 1..4196 /db_xref="H-InvDB:HIT000035375" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:19563 IMAGE:3845478" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_21" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..4196 /gene="DDB1" /gene_synonym="DDBA" /gene_synonym="UV-DDB1" /gene_synonym="XAP1" /gene_synonym="XPCE" /gene_synonym="XPE" /gene_synonym="XPE-BF" /db_xref="GeneID:1642" /db_xref="HGNC:HGNC:2717" /db_xref="MIM:600045" CDS 74..3496 /gene="DDB1" /gene_synonym="DDBA" /gene_synonym="UV-DDB1" /gene_synonym="XAP1" /gene_synonym="XPCE" /gene_synonym="XPE" /gene_synonym="XPE-BF" /codon_start=1 /product="damage-specific DNA binding protein 1, 127kDa" /protein_id="AAH11686.1" /db_xref="GeneID:1642" /db_xref="HGNC:HGNC:2717" /db_xref="MIM:600045" /translation="MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVV TAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIIT RAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLE ELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASM VIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDM EGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLV KLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRN GIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMG FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQV VVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISA RILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPL NSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRI EVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHT FEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG KLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYL KTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAF NLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLF GTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGF IDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH" BASE COUNT 1002 a 1050 c 1116 g 1028 t ORIGIN 1 cacctgtctt ttcgcttgtg tccctctttc tagtgtcgcg ctcgagtccc gacgggccgc 61 tccaagcctc gacatgtcgt acaactacgt ggtaacggcc cagaagccca ccgccgtgaa 121 cggctgcgtg accggacact ttacttcggc cgaagactta aacctgttga ttgccaaaaa 181 cacgagatta gagatctatg tggtcaccgc cgaggggctt cggcccgtca aagaggtggg 241 catgtatggg aagattgcgg tcatggagct tttcaggccc aagggggaga gcaaggacct 301 gctgtttatc ttgacagcga agtacaatgc ctgcatcctg gagtataaac agagtggcga 361 gagcattgac atcattacgc gagcccatgg caatgtccag gaccgcattg gccgcccctc 421 agagaccggc attattggca tcattgaccc tgagtgccgg atgattggcc tgcgtctcta 481 tgatggcctt ttcaaggtta ttccactaga tcgcgataat aaagaactca aggccttcaa 541 catccgcctg gaggagctgc atgtcattga tgtcaagttc ctatatggtt gccaagcacc 601 tactatttgc tttgtctacc aggaccctca ggggcggcac gtaaaaacct atgaggtgtc 661 tctccgagaa aaggaattca ataagggccc ttggaaacag gaaaatgtcg aagctgaagc 721 ttccatggtg atcgcagtcc cagagccctt tgggggggcc atcatcattg gacaggagtc 781 aatcacctat cacaatggtg acaaatacct ggctattgcc cctcctatca tcaagcaaag 841 cacgattgtg tgccacaatc gagtggaccc taatggctca agatacctgc tgggagacat 901 ggaaggccgg ctcttcatgc tgcttttgga gaaggaggaa cagatggatg gcaccgtcac 961 tctcaaggat ctccgtgtag aactccttgg agagacctct attgctgagt gcttgacata 1021 ccttgataat ggtgttgtgt ttgtcgggtc tcgcctgggt gactcccagc ttgtgaagct 1081 caacgttgac agtaatgaac aaggctccta tgtagtggcc atggaaacct ttaccaactt 1141 aggacccatt gtcgatatgt gcgtggtgga cctggagagg caggggcagg ggcagctggt 1201 cacttgctct ggggctttca aggaaggttc tttgcggatc atccggaatg gaattggaat 1261 ccacgagcat gccagcattg acttaccagg catcaaagga ttatggccac tgcggtctga 1321 ccctaatcgt gagactgatg acactttggt gctctctttt gtgggccaga caagagttct 1381 catgttaaat ggagaggagg tagaagaaac cgaactgatg ggtttcgtgg atgatcagca 1441 gactttcttc tgtggcaacg tggctcatca gcagcttatc cagatcactt cagcatcggt 1501 gaggttggtc tctcaagaac ccaaagctct ggtcagtgaa tggaaggagc ctcaggccaa 1561 gaacatcagt gtggcctcct gcaatagcag ccaggtggtg gtggctgtag gcagggccct 1621 ctactatctg cagatccatc ctcaggagct ccggcagatc agccacacag agatggaaca 1681 tgaagtggct tgcttggaca tcaccccatt aggagacagc aatggactgt cccctctttg 1741 tgccattggc ctctggacgg acatctcggc tcgtatcttg aagttgccct cttttgaact 1801 actgcacaag gagatgctgg gtggagagat cattcctcgc tccatcctga tgaccacctt 1861 tgagagtagc cattacctcc tttgtgcctt gggagatgga gcgcttttct actttgggct 1921 caacattgag acaggtctgt tgagcgaccg taagaaggtg actttgggca cccagcccac 1981 cgtattgagg acttttcgtt ctctttctac caccaacgtc tttgcttgtt ctgaccgccc 2041 cactgtcatc tatagcagca accacaaatt ggtcttctca aatgtcaacc tcaaggaagt 2101 gaactacatg tgtcccctca attcagatgg ctatcctgac agcctggcgc tggccaacaa 2161 tagcaccctc accattggca ccatcgatga gatccagaag ctgcacattc gcacagttcc 2221 cctctatgag tctccaagga agatctgcta ccaggaagtg tcccagtgtt tcggggtcct 2281 ctccagccgc attgaagtcc aagacacgag tgggggcacg acagccttga ggcccagcgc 2341 tagcacccag gctctgtcca gcagtgtaag ctccagcaag ctgttctcca gcagcactgc 2401 tcctcatgag acctcctttg gagaagaggt ggaggtgcac aacctactta tcattgacca 2461 acacaccttt gaagtgcttc atgcccacca gtttctgcag aatgaatatg ccctcagtct 2521 ggtttcctgc aagctgggca aagaccccaa cacttacttc attgtgggca cagcaatggt 2581 gtatcctgaa gaggcagagc ccaagcaggg tcgcattgtg gtctttcagt attcggatgg 2641 aaaactacag actgtggctg aaaaggaagt gaaaggggcc gtgtactcta tggtggaatt 2701 taacgggaag ctgttagcca gcatcaatag cacggtgcgg ctctatgagt ggacaacaga 2761 gaaggagctg cgcactgagt gcaaccacta caacaacatc atggccctct acctgaagac 2821 caagggcgac ttcatcctgg tgggcgacct tatgcgctca gtgctgctgc ttgcctacaa 2881 gcccatggaa ggaaactttg aagagattgc tcgagacttt aatcccaact ggatgagtgc 2941 tgtggaaatc ttggatgatg acaattttct gggggctgaa aatgccttta acttgtttgt 3001 gtgtcaaaag gatagcgctg ccaccactga cgaggagcgg cagcacctcc aggaggttgg 3061 tcttttccac ctgggcgagt ttgtcaatgt cttttgccac ggctctctgg taatgcagaa 3121 tctgggtgag acttccaccc ccacacaagg ctcggtgctc ttcggcacgg tcaacggcat 3181 gatagggctg gtgacctcac tgtcagagag ctggtacaac ctcctgctgg acatgcagaa 3241 tcgactcaat aaagtcatca aaagtgtggg gaagatcgag cactccttct ggagatcctt 3301 tcacaccgag cggaagacag aaccagccac aggtttcatc gacggtgact tgattgagag 3361 tttcctggat attagccgcc ccaagatgca ggaggtggtg gcaaacctac agtatgacga 3421 tggcagcggt atgaagcgag aggccactgc agacgacctc atcaaggttg tggaggagct 3481 aactcggatc cattagccaa gggcaggggg cccctttgct gaccctcccc aaaggctttg 3541 ccctgctgcc ctccccctcc tctccaccat cgtcttcttg gccatgggag gcctttccct 3601 aagccagctg cccccagagc cacagttccc ctatgtggaa gtggggcggg cttcatagag 3661 acttgggaat gagctgaagg tgaaacattt tctccctgga tttttaccag tctcacatga 3721 ttccagccat caccttagac caccaagcct tgattggtgt tgccagttgt cctccttccg 3781 gggaaggatt ttgcagttct ttggctgaaa ggaagctgtg cgtgtgtgtg tgtttatgtg 3841 tgtgtgtgta tgtgtatctc acactcatgc attgtcctct ttttatttag attggcagtg 3901 tagggagttg tgggtagtgg ggaagagggt taggagggtt tcattgtctg tgaagtgaga 3961 ccttcctttt acttttcttc tattgcctct gagagcatca ggcctagagg cctgactgcc 4021 aagccatggg tagcctgggt gtaaaacctg gagatggtgg atgatcccca cgccacagcc 4081 cttttgtctc tgcaaactgc cttcttcgga aagaagaagg tgggaggatg tgaattgtta 4141 gtttctgagt tttaccaaat aaagtagaat ataagaagaa aaaaaaaaaa aaaaaa //