LOCUS BC011681 1741 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting and assembly machinery component 50 homolog
(S. cerevisiae), mRNA (cDNA clone MGC:19651 IMAGE:3010765),
complete cds.
ACCESSION BC011681
VERSION BC011681.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1741)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1741)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC011681.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 27 Row: a Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..1741
/db_xref="H-InvDB:HIT000035370"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:19651 IMAGE:3010765"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1741
/gene="SAMM50"
/gene_synonym="CGI-51"
/gene_synonym="OMP85"
/gene_synonym="SAM50"
/gene_synonym="TOB55"
/gene_synonym="TRG-3"
/gene_synonym="YNL026W"
/db_xref="GeneID:25813"
/db_xref="HGNC:HGNC:24276"
CDS 158..1567
/gene="SAMM50"
/gene_synonym="CGI-51"
/gene_synonym="OMP85"
/gene_synonym="SAM50"
/gene_synonym="TOB55"
/gene_synonym="TRG-3"
/gene_synonym="YNL026W"
/codon_start=1
/product="sorting and assembly machinery component 50
homolog (S. cerevisiae)"
/protein_id="AAH11681.1"
/db_xref="GeneID:25813"
/db_xref="HGNC:HGNC:24276"
/translation="MGTVHARSLEPLPSSGPDFGGLGEEAEFVEVEPEAKQEILENKD
VVVQHVHFDGLGRTKDDIIICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVL
IDTCQGDDALPNGLDVTFEVTELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVT
FQFSYGTKETSYGLSFFKPRPGNFERNFSVNLYKVTGQFPWSSLRETDRGMSAEYSFP
IWKTSHTVKWEGVWRELGCLSRTASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRG
ALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVFSASFWGGMLVPIGDKPSSIA
DRFYLGGPTSVRGFSMHSIGPQSEGDYLGGEAYWAGGLHLYTPLPFRPGQGGFGELFR
THFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAGIVLRLGNIARLELNYCVPMGV
QTGDRICDGVQFGAGIRFL"
BASE COUNT 456 a 406 c 465 g 414 t
ORIGIN
1 cggggaatca tggccgcccc cagtgttccg cgtccggggg tttgtgggag ttgccttgac
61 ctgcagctcc gccaccgcgg acccgccttc tgccctcagc agcagacgct ctgtcccgcc
121 cgggcagctc tgcgaggcag cggctggaga gggaaccatg gggactgtgc acgcccggag
181 tttggagcct cttccatcaa gtggacctga ttttggagga ttaggagaag aagctgaatt
241 tgttgaagtt gagcctgaag ctaaacagga aattcttgaa aacaaagatg tggttgttca
301 acatgttcat tttgatggac ttggaaggac taaagatgat atcatcattt gtgaaattgg
361 agatgttttc aaggccaaaa acctaattga ggtaatgcgg aaatctcatg aagcccgtga
421 aaaattgctc cgtcttggaa tttttagaca agtggatgtt ttgattgaca catgtcaagg
481 tgatgacgca cttccaaatg ggttagacgt tacctttgaa gtaactgaat tgaggagatt
541 aacgggcagt tataacacca tggttggaaa caatgaaggc agtatggtac ttggcctcaa
601 gcttcctaat cttcttggtc gtgcagaaaa ggtgaccttt cagttttcct atggaacaaa
661 agaaacttcg tatggcctgt ccttcttcaa accacggccc ggaaacttcg aaagaaattt
721 ctctgtaaac ttatataaag ttactggaca gttcccttgg agctcactgc gggagacgga
781 cagaggaatg tcagctgagt acagttttcc catatggaag accagccaca ctgtcaagtg
841 ggaaggcgta tggcgagaac tgggctgcct ctcaaggacg gcgtcatttg ctgttcgaaa
901 agaaagcgga cattcactga aatcatctct ttcgcacgcc atggtcatcg attctcggaa
961 ttcttccatc ttaccaagga gaggtgcttt gctgaaagtt aaccaggaac tggcaggcta
1021 cactggcggg gatgtgagct tcatcaaaga agattttgaa cttcagttga acaagcaact
1081 catatttgat tcagtttttt cagcgtcttt ctggggcgga atgttggtac ccattggtga
1141 taagccgtca agcattgctg ataggtttta cctcggggga cccacaagcg tccgcggatt
1201 cagcatgcac agcatcgggc cacagagcga aggagactac ctaggtggag aagcgtactg
1261 ggccggcggc ctgcacctct acaccccatt acctttccgg ccaggccagg gtggctttgg
1321 agaacttttc cgaacacact tctttctcaa cgcaggaaac ctctgcaacc tcaactatgg
1381 ggagggcccc aaagctcata ttcgtaagct ggctgagtgc atccgctggt cgtacggggc
1441 cgggattgtc ctcaggcttg gcaacatcgc tcggttggaa cttaattact gcgtccccat
1501 gggagtacag acaggcgaca ggatatgtga tggcgtccag tttggagctg ggataaggtt
1561 cctgtagccg acacccctac aggagaagct ctgggactgg ggcagcagca aggcgcccat
1621 gccacacacc gtctctcgag gaaacgcggt tcagcgattc tttgactgcg gaccctgtgg
1681 gaaaccccgt caataaatgt taaagacaca ctccgaaaaa aaaaaaaaaa aaaaaaaaaa
1741 a
//