LOCUS BC011674 2843 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3,
mRNA (cDNA clone MGC:15175 IMAGE:4300048), complete cds.
ACCESSION BC011674
VERSION BC011674.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2843)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2843)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC011674.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 26 Row: n Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62739167.
FEATURES Location/Qualifiers
source 1..2843
/db_xref="H-InvDB:HIT000035363"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:15175 IMAGE:4300048"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2843
/gene="PLOD3"
/gene_synonym="LH3"
/db_xref="GeneID:8985"
/db_xref="HGNC:HGNC:9083"
/db_xref="MIM:603066"
CDS 314..2530
/gene="PLOD3"
/gene_synonym="LH3"
/codon_start=1
/product="procollagen-lysine, 2-oxoglutarate 5-dioxygenase
3"
/protein_id="AAH11674.1"
/db_xref="GeneID:8985"
/db_xref="HGNC:HGNC:9083"
/db_xref="MIM:603066"
/translation="MTSSGPGPRFLLLLPLLLPPAASASDRPRGRDPVNPEKLLVITV
ATAETEGYLRFLRSAEFFNYTVRTLGLGEEWRGGDVARTVGGGQKVRWLKKEMEKYAD
REDMIIMFVDSYDVILAGSPTELLKKFVQSGSRLLFSAESFCWPEWGLAEQYPEVGTG
KRFLNSGGFIGFATTIHQIVRQWKYKDDDDDQLFYTRLYLDPGLREKLSLNLDHKSRI
FQNLNGALDEVVLKFDRNRVRIRNVAYDTLPIVVHGNGPTKLQLNYLGNYVPNGWTPE
GGCGFCNQDRRTLPGGQPPPRVFLAVFVEQPTPFLPRFLQRLLLLDYPPDRVTLFLHN
NEVFHEPHIADSWPQLQDHFSAVKLVGPEEALSPGEARDMAMDLCRQDPECEFYFSLD
ADAVLTNLQTLRILIEENRKVIAPMLSRHGKLWSNFWGALSPDEYYARSEDYVELVQR
KRVGVWNVPYISQAYVIRGDTLRMELPQRDVFSGSDTDPDMAFCKSFRDKGIFLHLSN
QHEFGRLLATSRYDTEHLHPDLWQIFDNPVDWKEQYIHENYSRALEGEGIVEQPCPDV
YWFPLLSEQMCDELVAEMEHYGQWSGGRHEDSRLAGGYENVPTVDIHMKQVGYEDQWL
QLLRTYVGPMTESLFPGYHTKARAVMNFVVRYRPDEQPSLRPHHDSSTFTLNVALNHK
GLDYEGGGCRFLRYDCVISSPRKGWALLHPGRLTHYHEGLPTTWGTRYIMVSFVDP"
BASE COUNT 543 a 901 c 837 g 562 t
ORIGIN
1 gcttccacat gtgtcaagcg gctggctcag cccagagtcc ctgtctcccg cccgccggcc
61 cgagccgccg cccctccccc gcctcccgtg cgcccgggac aatcctcgcc ttgtctgtgg
121 cgccggcatc tggagctttc tgtagcctcc ggatacgcct ttttttcagg gcgtagcccc
181 agccaagctg ctccccgcgg cggccgcaca gcagcccgag cgcccccttt ccggagctcc
241 cctccggagc tgggatccag gcgcgtagcg gagatcccag gatcctgggt gctgtctggg
301 cccgctcccc accatgacct cctcggggcc tggaccccgg ttcctgctgc tgctgccgct
361 gctgctgccc cctgcggcct cagcctccga ccggccccgg ggccgagacc cggtcaaccc
421 agagaagctg ctggtgatca ctgtggccac agctgaaacc gaggggtacc tgcgtttcct
481 gcgctctgcg gagttcttca actacactgt gcggaccctg ggcctgggag aggagtggcg
541 agggggtgat gtggctcgaa cagttggtgg aggacagaag gtccggtggt taaagaagga
601 aatggagaaa tacgctgacc gggaggatat gatcatcatg tttgtggata gctacgacgt
661 gattctggcc ggcagcccca cagagctgct gaagaagttc gtccagagtg gcagccgcct
721 gctcttctct gcagagagct tctgctggcc cgagtggggg ctggcggagc agtaccctga
781 ggtgggcacg gggaagcgct tcctcaattc tggtggattc atcggttttg ccaccaccat
841 ccaccaaatc gtgcgccagt ggaagtacaa ggatgatgac gacgaccagc tgttctacac
901 acggctctac ctggacccag gactgaggga gaaactcagc cttaatctgg atcataagtc
961 tcggatcttt cagaacctca acggggcttt agatgaagtg gttttaaagt ttgatcggaa
1021 ccgtgtgcgt atccggaacg tggcctacga cacgctcccc attgtggtcc atggaaacgg
1081 tcccactaag ctgcagctca actacctggg aaactacgtc cccaatggct ggactcctga
1141 gggaggctgt ggcttctgca accaggaccg gaggacactc ccgggggggc agcctccccc
1201 ccgggtgttt ctggccgtgt ttgtggaaca gcctactccg tttctgcccc gcttcctgca
1261 gcggctgcta ctcctggact atccccccga cagggtcacc cttttcctgc acaacaacga
1321 ggtcttccat gaaccccaca tcgctgactc ctggccgcag ctccaggacc acttctcagc
1381 tgtgaagctc gtggggccgg aggaggctct gagcccaggc gaggccaggg acatggccat
1441 ggacctgtgt cggcaggacc ccgagtgtga gttctacttc agcctggacg ccgacgctgt
1501 cctcaccaac ctgcagaccc tgcgtatcct cattgaggag aacaggaagg tgatcgcccc
1561 catgctgtcc cgccacggca agctgtggtc caacttctgg ggcgccctga gccccgatga
1621 gtactacgcc cgctccgagg actacgtgga gctggtgcag cggaagcgag tgggtgtgtg
1681 gaatgtacca tacatctccc aggcctatgt gatccggggt gataccctgc ggatggagct
1741 gccccagagg gatgtgttct cgggcagtga cacagacccg gacatggcct tctgtaagag
1801 ctttcgagac aagggcatct tcctccatct gagcaatcag catgaatttg gccggctcct
1861 ggccacttcc agatacgaca cggagcacct gcaccccgac ctctggcaga tcttcgacaa
1921 ccccgtcgac tggaaggagc agtacatcca cgagaactac agccgggccc tggaagggga
1981 aggaatcgtg gagcagccat gcccggacgt gtactggttc ccactgctgt cagaacaaat
2041 gtgtgatgag ctggtggcag agatggagca ctacggccag tggtcaggcg gccggcatga
2101 ggattcaagg ctggctggag gctacgagaa tgtgcccacc gtggacatcc acatgaagca
2161 ggtggggtac gaggaccagt ggctgcagct gctgcggacg tatgtgggcc ccatgaccga
2221 gagcctgttt cccggttacc acaccaaggc gcgggcggtg atgaactttg tggttcgcta
2281 ccggccagac gagcagccgt ctctgcggcc acaccacgac tcatccacct tcaccctcaa
2341 cgttgccctc aaccacaagg gcctggacta tgagggaggt ggctgccgct tcctgcgcta
2401 cgactgtgtg atctcctccc cgaggaaggg ctgggcactc ctgcaccccg gccgcctcac
2461 ccactaccac gaggggctgc caacgacctg gggcacacgc tacatcatgg tgtcctttgt
2521 cgacccctga cactcaacca ctctgccaaa cctgccctgc cattgtgcct ttttaggggg
2581 cctggccccc gtcctgggag ttgggggatg ggtctctctg tctccccact tcctgagttc
2641 atgttccgcg tgcctgaact gaatatgtca ccttgctccc aagacacggc cctctcagga
2701 agctcccgga gtccccgcct ctctcctccg cccacagggg ttcgtgggca cagggcttct
2761 ggggactccc cgcgtgataa attattaatg ttccgcagtc tcactctgaa taaaggacag
2821 tttgtaaaaa aaaaaaaaaa aaa
//