LOCUS BC011571 3745 bp mRNA linear HUM 09-JUN-2008 DEFINITION Homo sapiens itchy E3 ubiquitin protein ligase homolog (mouse), mRNA (cDNA clone MGC:20230 IMAGE:4560366), complete cds. ACCESSION BC011571 VERSION BC011571.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3745) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3745) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 29 Row: e Column: 13 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 27477108. FEATURES Location/Qualifiers source 1..3745 /db_xref="H-InvDB:HIT000035298" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:20230 IMAGE:4560366" /tissue_type="Kidney, renal cell adenocarcinoma" /clone_lib="NIH_MGC_14" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..3745 /gene="ITCH" /gene_synonym="AIF4" /gene_synonym="AIP4" /gene_synonym="dJ468O1.1" /gene_synonym="NAPP1" /db_xref="GeneID:83737" /db_xref="HGNC:HGNC:13890" /db_xref="MIM:606409" CDS 137..2848 /gene="ITCH" /gene_synonym="AIF4" /gene_synonym="AIP4" /gene_synonym="dJ468O1.1" /gene_synonym="NAPP1" /codon_start=1 /product="ITCH protein" /protein_id="AAH11571.1" /db_xref="GeneID:83737" /db_xref="HGNC:HGNC:13890" /db_xref="MIM:606409" /translation="MSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVE VTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLGTAALDI YETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLESEVVTNGETTCSENG VSLCLPRLECNSAISAHCNLCLPGLSDSPISASRVAGFTGASQNDDGSRSKDETRVST NGSDDPEDAGAGENRRVSGNNSPSLSNGGFKPSRPPRPSRPPPPTPRRPASVNGSPSA TSESDGSSTGSLPPTNTNTNTSEGATSGLIIPLTISGGSGPRPLNPVTQAPLPPGWEQ RVDQHGRVYYVDHVEKRTTWDRPEPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTLE SVRNYEQWQLQRSQLQGAMQQFNQRFIYGNQDLFATSQSKEFDPLGPLPPGWEKRTDS NGRVYFVNHNTRITQWEDPRSQGQLNEKPLPEGWEMRFTVDGIPYFVDHNRRTTTYID PRTGKSALDNGPQIAYVRDFKAKVQYFRFWCQQLAMPQHIKITVTRKTLFEDSFQQIM SFSPQDLRRRLWVIFPGEEGLDYGGVAREWFFLLSHEVLNPMYCLFEYAGKDNYCLQI NPASYINPDHLKYFRFIGRFIAMALFHGKFIDTGFSLPFYKRILNKPVGLKDLESIDP EFYNSLIWVKENNIEECDLEMYFSVDKEILGEIKSHDLKPNGGNILVTEENKEEYIRM VAEWRLSRGVEEQTQAFFEGFNEILPQQYLQYFDAKELEVLLCGMQEIDLNDWQRHAI YRHYARTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGGFADLMGSNGPQKFCI EKVGKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETEGFGQE" BASE COUNT 1133 a 748 c 837 g 1027 t ORIGIN 1 gtctagggac tgaggagtcg ccgccgcccc gagtcccggt accatgcatt tcacagtggc 61 cttgtggaga caacgcctta acccaaggaa gtgactcaaa ctgtgagaac ttcaggtttt 121 ccaacctatt ggtggtatgt ctgacagtgg atcacaactt ggttcaatgg gtagcctcac 181 catgaaatca cagcttcaga tcactgtcat ctcagcaaaa cttaaggaaa ataagaagaa 241 ttggtttgga ccaagtcctt acgtagaggt cacagtagat ggacagtcaa agaagacaga 301 aaaatgcaac aacacaaaca gtcccaagtg gaagcaaccc cttacagtta tcgttacccc 361 tgtgagtaaa ttacattttc gtgtgtggag tcaccagaca ctgaaatctg atgttttgtt 421 gggaactgct gcattagata tttatgaaac attaaagtca aacaatatga aacttgaaga 481 agtagttgtg actttgcagc ttggaggtga caaagagcca acagagacaa taggagactt 541 gtcaatttgt cttgatgggc tacagttaga gtctgaagtt gttaccaatg gtgaaactac 601 atgttcagaa aatggggttt cgctctgttt gcccaggctg gagtgcaata gtgcgatctc 661 ggctcactgc aacctctgcc tcccgggttt aagtgattct cctatctcag cctcccgagt 721 agctgggttt acaggtgctt ctcagaatga tgatggctcc agatccaagg atgaaacaag 781 agtgagcaca aatggatcag atgaccctga agatgcagga gctggtgaaa ataggagagt 841 cagtgggaat aattctccat cactctcaaa tggtggtttt aaaccttcta gacctccaag 901 accttcacga ccaccaccac ccaccccacg tagaccagca tctgtcaatg gttcaccatc 961 tgccacttct gaaagtgatg ggtctagtac aggctctctg ccgccgacaa atacaaatac 1021 aaatacatct gaaggagcaa catctggatt aataattcct cttactatat ctggaggctc 1081 aggccctagg ccattaaatc ctgtaactca agctcccttg ccacctggtt gggagcagag 1141 agtggaccag cacgggcgag tttactatgt agatcatgtt gagaaaagaa caacatggga 1201 tagaccagaa cctctacctc ctggctggga acggcgggtt gacaacatgg gacgtattta 1261 ttatgttgac catttcacaa gaacaacaac gtggcagagg ccaacactgg aatccgtccg 1321 gaactatgaa caatggcagc tacagcgtag tcagcttcaa ggagcaatgc agcagtttaa 1381 ccagagattc atttatggga atcaagattt atttgctaca tcacaaagta aagaatttga 1441 tcctcttggt ccattgccac ctggatggga gaagagaaca gacagcaatg gcagagtata 1501 tttcgtcaac cacaacacac gaattacaca atgggaagac cccagaagtc aaggtcaatt 1561 aaatgaaaag cccttacctg aaggttggga aatgagattc acagtggatg gaattccata 1621 ttttgtggac cacaatagaa gaactaccac ctatatagat ccccgcacag gaaaatctgc 1681 cctagacaat ggacctcaga tagcctatgt tcgggacttc aaagcaaagg ttcagtattt 1741 ccggttctgg tgtcagcaac tggccatgcc acagcacata aagattacag tgacaagaaa 1801 aacattgttt gaggattcct ttcaacagat aatgagcttc agtccccaag atctgcgaag 1861 acgtttgtgg gtgatttttc caggagaaga aggtttagat tatggaggtg tagcaagaga 1921 atggttcttt cttttgtcac atgaagtgtt gaacccaatg tattgcctgt ttgaatatgc 1981 agggaaggat aactactgct tgcagataaa ccccgcttct tacatcaatc cagatcacct 2041 gaaatatttt cgttttattg gcagatttat tgccatggct ctgttccatg ggaaattcat 2101 agacacgggt ttttctttac cattctataa gcgtatcttg aacaaaccag ttggactcaa 2161 ggatttagaa tctattgatc cagaatttta caattctctc atctgggtta aggaaaacaa 2221 tattgaggaa tgtgatttgg aaatgtactt ctccgttgac aaagaaattc taggtgaaat 2281 taagagtcat gatctgaaac ctaatggtgg caatattctt gtaacagaag aaaataaaga 2341 ggaatacatc agaatggtag ctgagtggag gttgtctcga ggtgttgaag aacagacaca 2401 agctttcttt gaaggcttta atgaaattct tccccagcaa tatttgcaat actttgatgc 2461 aaaggaatta gaggtccttt tatgtggaat gcaagagatt gatttgaatg actggcaaag 2521 acatgccatc taccgtcatt atgcaaggac cagcaaacaa atcatgtggt tttggcagtt 2581 tgttaaagaa attgataatg agaagagaat gagacttctg cagtttgtta ctggaacctg 2641 ccgattgcca gtaggaggat ttgctgatct catggggagc aatggaccac agaaattctg 2701 cattgaaaaa gttgggaaag aaaattggct acccagaagt catacctgtt ttaatcgcct 2761 ggacctgcca ccatacaaga gctatgagca actgaaggaa aagctgttgt ttgccataga 2821 agaaacagaa ggatttggac aagagtaact tctgagaact tgcaccatga atgggcaaga 2881 acttatttgc aatgtttgtc cttctctgcc tgttgcacat cttgtaaaat tggacaatgg 2941 ctctttagag agttatctga gtgtaagtaa attaatgttc tcatttagat ttatctccca 3001 gtgatttcta ctcagcgttt ccagaaatca ggtctgcaaa tgactagtca gaaccttgct 3061 taacatgaga ttttaacaca acaatgaaat ttgccttgtc ttattccact agtttattcc 3121 tttaacaaca atattttatg tgtgtcaaaa gtctcacttg ggagtagtgt ttttttcttt 3181 tagacattct gcagacatgc agggaagtcc tttggtaact gcaatataca agattttcct 3241 attaagcctc ttggtaagag gcatttgtta aaagtgcaag cttactcctg cttctgggga 3301 tgtgagcaaa attcgggctt gtgttctccc tctcatttta gtctgacttg actattgttt 3361 ttcctttctg gcgcatgaat ccatacatca ttcctggaag tgaggcaaga ctcttgcatc 3421 tctacaaagt agttttgtca atttgaattc agggaaaagt tggtcacagc ctgcaaatga 3481 cttcatttgg aagtctgatt gtttcagttg cctgacaaat actacacttt acaaacaatg 3541 ttaacactgt gattccttca ttgttttaag aagttaacct agggccgggc atggtggctc 3601 atacctgtaa tcctagcact ctgggaggcc gaggcaggag gatcccttta gcccaggagt 3661 taaagaccag cctgggcaac atagggagac cctgtctttt ttttgggcag cgtggtgggg 3721 gataaataaa aaaaaaaaaa aaaaa //