LOCUS BC011551 1919 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens zinc finger, C3HC-type containing 1, mRNA (cDNA clone
MGC:19971 IMAGE:4561164), complete cds.
ACCESSION BC011551
VERSION BC011551.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1919)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1919)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (30-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 29 Row: e Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 66348044.
FEATURES Location/Qualifiers
source 1..1919
/db_xref="H-InvDB:HIT000035283"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:19971 IMAGE:4561164"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1919
/gene="ZC3HC1"
/gene_synonym="1110054L24Rik"
/gene_synonym="HSPC216"
/gene_synonym="NIPA"
/db_xref="GeneID:51530"
/db_xref="HGNC:HGNC:29913"
CDS 2..1510
/gene="ZC3HC1"
/gene_synonym="1110054L24Rik"
/gene_synonym="HSPC216"
/gene_synonym="NIPA"
/codon_start=1
/product="zinc finger, C3HC-type containing 1"
/protein_id="AAH11551.1"
/db_xref="GeneID:51530"
/db_xref="HGNC:HGNC:29913"
/translation="MAAPCEGQAFAVGVEKNWGAVVRSPEGTPQKIRQLIDEGIAPEE
GGVDAKDTSATSQSVNGSPQAEQPSLESTSKEAFFSRVETFSSLKWAGKPFELSPLVC
AKYGWVTVECDMLKCSSCQAFLCASLQPAFDFDRYKQRCAELKKALCTAHEKFCFWPD
SPSPDRFGMLPLDEPAILVSEFLDRFQSLCHLDLQLPSLRPEDLKTMCLTEDKISLLL
HLLEDELDHRTDERKTTIKLGSDIQVHVTACILSVCGWACSSSLESMQLSLIACSQCM
RKVGLWGFQQIESSMTDLDASFGLTSSPIPGLEGRPERLPLVPESPRRMMTRSQDATF
SPGSEQAEKSPGPIVSRTRSWDSSSPVDHPEPEAASPTTRTRPVTRSMGTGDTPGLEV
PSSPLRKAKRARLCSSSSSDTSSRSFFDPTSQHRDWCPWVNITLGKESRENGGTEPDA
SAPAEPGWKAVLTILLAHKQSSQPAETDSMSLSEKSRKVFRIFRQWESLCSC"
BASE COUNT 496 a 480 c 488 g 455 t
ORIGIN
1 gatggcggcg ccctgtgagg gacaagcgtt tgccgtaggg gttgaaaaga attggggtgc
61 agtagttcgc tccccagaag ggacccccca gaaaatccgg cagctgatag atgaggggat
121 tgccccggaa gagggaggcg tggacgcgaa ggacacgtct gccacatccc agtcagttaa
181 tggatcaccc caagcggaac aaccttcatt ggaatctaca agcaaagaag ccttctttag
241 cagagtggaa acattttctt ctttgaaatg ggcaggtaag ccctttgagc tgtctccact
301 cgtctgtgca aaatatggct gggtcacagt ggaatgtgat atgctcaagt gctctagctg
361 tcaagctttt ctctgtgcca gtttacaacc agcttttgac tttgacagat ataagcaacg
421 atgtgctgag ctgaagaaag ccttgtgtac tgcccatgag aagttctgtt tctggccaga
481 cagcccatcc ccagaccgat ttgggatgtt gcccctggat gagcctgcta ttcttgttag
541 tgaattccta gatcgttttc aaagcctttg tcacttggac ctccagcttc cttccctaag
601 gccggaggac ttgaaaacta tgtgcttgac agaagacaag atcagtcttc tcctacactt
661 gcttgaagat gaacttgatc accgaactga tgagagaaaa actacaatca aattaggctc
721 agacatccaa gtccacgtca ctgcctgtat tctctctgtg tgtggctggg cgtgtagttc
781 ctctttggaa tccatgcagc tctccctgat agcatgttcg caatgtatga ggaaggtggg
841 gctctggggc ttccagcaga ttgaatcgtc catgactgac ctggatgcat cctttggcct
901 gaccagctcc ccaatcccag gccttgaggg gcgaccagag cgcttacctc tggtgcctga
961 atctcctcgg aggatgatga cccggagcca ggatgccact ttctccccag gctcagagca
1021 ggctgaaaag agccctggtc ccattgtctc tcgaactcgg agctgggact cttccagtcc
1081 tgttgaccat cctgagccag aggctgctag ccccaccacc agaactcgcc cagtgacccg
1141 aagcatggga acaggagaca cccctggcct ggaggtacca tctagccctc tgcggaaagc
1201 caagcgagct cgcctctgct cctccagcag ttcggacaca tcttcccgaa gcttctttga
1261 tcccacctct cagcatagag actggtgccc ttgggtgaat atcacacttg gcaaagaaag
1321 cagggagaat ggtggaactg aaccagatgc cagcgcccca gcagagccag gctggaaagc
1381 agtgctgacc atcctcttgg cgcacaaaca gtctagccag ccagctgaaa cggactccat
1441 gagtctctct gagaaatcaa ggaaagtatt ccgaatattt cggcagtggg aatctctgtg
1501 ctcatgctga agatactcca gcgccttcct ggagatagct ggaatgagag tgactttttg
1561 aaaaattaag gctgagttcc tttcggtcag ctgacactaa gtttttcctg ttctgggtta
1621 atcataagga gccccctgcc atagcaaagg cagtgagtgt caactatctg catctggctg
1681 agagagaccc gtttcctttc agggatgtgg acagggtaag ggcagcaagc atggttctgt
1741 taaaggagtg tggggttaac agactagaag gaagactaag gacctgacca cccatttcag
1801 catcttcaat gtggagcagt gttctgagga ctcttctatc ctaggactat gacagtgtgt
1861 attaataaaa tatttgctaa gattctcaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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