LOCUS BC011447 1123 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens major histocompatibility complex, class II, DM alpha,
mRNA (cDNA clone MGC:13532 IMAGE:4245221), complete cds.
ACCESSION BC011447
VERSION BC011447.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1123)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1123)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 19 Row: g Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 18765714.
FEATURES Location/Qualifiers
source 1..1123
/db_xref="H-InvDB:HIT000035253_08"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:13532 IMAGE:4245221"
/tissue_type="Skeletal Muscle"
/clone_lib="NIH_MGC_81"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1123
/gene="HLA-DMA"
/gene_synonym="D6S222E"
/gene_synonym="DMA"
/gene_synonym="HLADM"
/gene_synonym="RING6"
/db_xref="GeneID:3108"
/db_xref="HGNC:HGNC:4934"
/db_xref="MIM:142855"
CDS 60..845
/gene="HLA-DMA"
/gene_synonym="D6S222E"
/gene_synonym="DMA"
/gene_synonym="HLADM"
/gene_synonym="RING6"
/codon_start=1
/product="major histocompatibility complex, class II, DM
alpha"
/protein_id="AAH11447.1"
/db_xref="GeneID:3108"
/db_xref="HGNC:HGNC:4934"
/db_xref="MIM:142855"
/translation="MGHEQNQGAALLQMLPLLWLLPHSWAVPEAPTPMWPDDLQNHTF
LHTVYCQDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPEFADWAQEQGDAPAILFDK
EFCEWMIQQIGPKLDGKIPVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVN
WQHHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWV
PRNALPSDLLENVLCGVAFGLGVLGIIVGIVLIIYFRKPCSGD"
BASE COUNT 255 a 306 c 277 g 285 t
ORIGIN
1 ggggggggaa gctgggttgg ctgggttggt agctcctacc tactgtgtgg caagaaggta
61 tgggtcatga acagaaccaa ggagctgcgc tgctacagat gttaccactt ctgtggctgc
121 taccccactc ctgggccgtc cctgaagctc ctactccaat gtggccagat gacctgcaaa
181 accacacatt cctgcacaca gtgtactgcc aggatgggag tcccagtgtg ggactctctg
241 aggcctacga cgaggaccag cttttcttct tcgacttttc ccagaacact cgggtgcctc
301 gcctgcccga atttgctgac tgggctcagg aacagggaga tgctcctgcc attttatttg
361 acaaagagtt ctgcgagtgg atgatccagc aaatagggcc aaaacttgat gggaaaatcc
421 cggtgtccag agggtttcct atcgctgaag tgttcacgct gaagcccctg gagtttggca
481 agcccaacac tttggtctgt tttgtcagta atctcttccc acccatgctg acagtgaact
541 ggcagcatca ttccgtccct gtggaaggat ttgggcctac ttttgtctca gctgtcgatg
601 gactcagctt ccaggccttt tcttacttaa acttcacacc agaaccttct gacattttct
661 cctgcattgt gactcacgaa attgaccgct acacagcaat tgcctattgg gtaccccgga
721 acgcactgcc ctcagatctg ctggagaatg tgctgtgtgg cgtggccttt ggcctgggtg
781 tgctgggcat catcgtgggc attgttctca tcatctactt ccggaagcct tgctcaggtg
841 actgattctt ccagaccaga gtttgatgcc agcagcttcg gccatccaaa cagaggatgc
901 tcagatttct cacatcctgc ccaggatctc ctcttagggt agaagaagtc tctgggacat
961 ccctggggtg tgtgtgtaga tttcccacct ggggactctg ctgtccctgg gcttgcatcc
1021 cagggatccc agagtggcct gcctatcaca accacatccc ttccccccac aaggcaataa
1081 atctcatttc ttcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//