LOCUS BC011268 1999 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens phytanoyl-CoA 2-hydroxylase interacting protein-like,
mRNA (cDNA clone MGC:18231 IMAGE:4156912), complete cds.
ACCESSION BC011268
VERSION BC011268.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1999)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1999)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC011268.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: e Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33469020.
FEATURES Location/Qualifiers
source 1..1999
/db_xref="H-InvDB:HIT000035208"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:18231 IMAGE:4156912"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1999
/gene="PHYHIPL"
/gene_synonym="KIAA1796"
/db_xref="GeneID:84457"
/db_xref="HGNC:HGNC:29378"
CDS 106..1236
/gene="PHYHIPL"
/gene_synonym="KIAA1796"
/codon_start=1
/product="phytanoyl-CoA 2-hydroxylase interacting
protein-like"
/protein_id="AAH11268.2"
/db_xref="GeneID:84457"
/db_xref="HGNC:HGNC:29378"
/translation="MEVPRLDHALNSPTSPCEEVIKNLSLEAIQLCDRDGNKSQDSGI
AEMEELPVPHNIKISNITCDSFKISWEMDSKSKDRITHYFIDLNKKENKNSNKFKHKD
VPTKLVAKAVPLPMTVRGHWFLSPRTEYTVAVQTASKQVDGDYVVSEWSEIIEFCTAD
YSKVHLTQLLEKAEVIAGRMLKFSVFYRNQHKEYFDYVREHHGNAMQPSVKDNSGSHG
SPISGKLEGIFFSCSTEFNTGKPPQDSPYGRYRFEIAAEKLFNPNTNLYFGDFYCMYT
AYHYVILVIAPVGSPGDEFCKQRLPQLNSKDNKFLTCTEEDGVLVYHHAQDVILEVIY
TDPVDLSLGTVAEITGHQLMSLSTANAKKDPSCKTCNISVGR"
BASE COUNT 624 a 422 c 367 g 586 t
ORIGIN
1 tccctccctc tgccactccc cctccctttc ccgctcttct tgcccacccg gccggcagag
61 agagcctgga tacgaagcag gcgggcttca gagtgggttg gaaaaatgga ggtgccgcgc
121 ctggatcatg ccctcaacag ccccaccagc ccctgtgagg aggtgatcaa aaacctcagc
181 ctggaggcca ttcagctgtg cgaccgggac gggaacaaat cacaagacag tggcatagca
241 gagatggaag aacttcctgt accacataac atcaaaataa gcaatataac gtgtgactca
301 ttcaagattt catgggaaat ggattcaaaa tcaaaggatc gcattacaca ctattttatt
361 gacctcaaca agaaagagaa caagaactcc aataaattta aacacaagga tgttcccaca
421 aaattggtgg caaaagctgt tcccttgcct atgactgtcc gtggacactg gtttttaagc
481 ccaagaactg aatatacagt agcagtgcag actgcctcaa aacaagttga tggtgattat
541 gttgtgtctg aatggagtga aattatagaa ttctgcaccg cagactattc aaaagttcat
601 ctaacacaat tgttggagaa ggctgaagtg attgcaggac gcatgcttaa gttttctgtt
661 ttttatcgta atcagcacaa agaatatttt gactatgttc gagaacatca tgggaatgct
721 atgcagccat ctgtcaagga taacagtggt agccatggct ctcctatcag tggaaaatta
781 gaaggcatct tcttcagctg cagcactgaa ttcaatactg gaaagccacc ccaggattca
841 ccttatggaa gatacaggtt tgagattgcc gcagaaaaac tttttaaccc caatactaac
901 ttatactttg gggacttcta ctgtatgtac actgcttatc attatgtgat tcttgttatt
961 gctcctgtgg gatcaccagg agatgaattt tgtaagcagc gccttcctca actaaattct
1021 aaggataata aatttttgac ctgtacagaa gaagatgggg tgctggttta ccaccatgcc
1081 caggatgtca ttttagaagt catttacact gaccctgtgg atctttctct gggcaccgtg
1141 gcagaaatca ctggtcatca gctcatgagt ttgtctactg caaatgcaaa gaaagatccc
1201 agctgcaaaa cctgtaatat cagtgttgga cgttaatgcc cacttttctt attcttactc
1261 agcccctttt cctcccttag gagcattggt cctctgttgt ccatttttat caccagatgt
1321 tttccactga agcatgcaca tgccactgtc accaaaacaa acaactacca ctttccaaat
1381 ttcattcaga accattttag tgttttccta ttccctaccc ctcccactac tttcaatgat
1441 gaaataccct aagttaagtt ctccttttga cactttattg cctagatgct gcaatgtttt
1501 tatgtttcct ttatgccaaa cataacaaaa cagttatata gactgcttta gcaaagtaca
1561 caataatggc ttataaatgg tgtttaaata tgcattcatt ttaatctact gaacaaatat
1621 tgggataact ccaaaccgca tgaaagggtg taattgcagc atgagttaaa tcttgaagcc
1681 tagaattgtc agcacttcca acttcttgtt tgacagtgtt atttatgtta tttatattag
1741 ctaacaggaa acaactactg tgtttcaaca taataaatat aatagaaaaa tattttattt
1801 gtattgttgt ataaaatatt tacaatcata tagaatatat agagttacat tttaatagca
1861 actgtgtaca tgtcacgaaa ccatttccct tatcaaagat gtaatttgta aacctcaaat
1921 agttgtgtat ctgtcctgtt agaagtagat gacttcaatt aaacaaattt atgaaggaaa
1981 aaaaaaaaaa aaaaaaaaa
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