LOCUS BC011234 2033 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens survival motor neuron domain containing 1, mRNA (cDNA clone MGC:17138 IMAGE:4153336), complete cds. ACCESSION BC011234 VERSION BC011234.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2033) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2033) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (25-JUL-2001) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: David N. Louis, M.D. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 19 Row: l Column: 4 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21361283. FEATURES Location/Qualifiers source 1..2033 /db_xref="H-InvDB:HIT000035196" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:17138 IMAGE:4153336" /tissue_type="Brain, anaplastic oligodendroglioma with 1p/19q loss" /clone_lib="NCI_CGAP_Brn67" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..2033 /gene="SMNDC1" /gene_synonym="SMNR" /gene_synonym="SPF30" /db_xref="GeneID:10285" /db_xref="HGNC:HGNC:16900" /db_xref="MIM:603519" CDS 193..909 /gene="SMNDC1" /gene_synonym="SMNR" /gene_synonym="SPF30" /codon_start=1 /product="survival motor neuron domain containing 1" /protein_id="AAH11234.1" /db_xref="GeneID:10285" /db_xref="HGNC:HGNC:16900" /db_xref="MIM:603519" /translation="MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIE LTKDLLSTQPSETLASSDSFASTQPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENG TAAITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKK AQRIKELEQEREDQKVKWQQFNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIAD KPMTQYQDTSKYNVRHLMPQ" BASE COUNT 616 a 374 c 397 g 646 t ORIGIN 1 cctccttcca gtgcccggcg ttcctccctt ccccctcgcc gccgaccgag ttcttccttt 61 tcagaccggg tcgccttgct gtcgtcgcgg tgattttcct gctactgcta ctgctgctgc 121 tgccaccgcc actaccactg ggctcatttg ccccgacccc ttcccgccgc cccgccccca 181 gccccacaca agatgtcaga ggatttagca aagcagctgg caagctacaa agctcagctc 241 cagcaagttg aagctgcatt atctggaaat ggagaaaatg aagatttgct aaaattgaag 301 aaagatttac aagaagttat agaactaacc aaagaccttc tgtcaactca accttctgag 361 acgcttgcaa gttcagacag ttttgcttct actcaaccta ctcattcatg gaaagtagga 421 gacaagtgta tggcagtctg gagtgaagat ggacagtgtt atgaagcgga gattgaggag 481 atagatgaag aaaatggcac cgctgcaatc acctttgctg gttatggcaa tgctgaagtg 541 actccactgt tgaacctcaa gcctgtagaa gaaggaagga aggcaaagga ggacagtggc 601 aacaaaccca tgtcaaaaaa agaaatgatt gcccagcagc gtgaatataa aaagaagaaa 661 gctttgaaaa aagctcagag aataaaagaa cttgagcagg aaagagagga ccagaaagtg 721 aaatggcaac aattcaacaa cagagcctat tctaaaaaca aaaaaggcca ggtaaagagg 781 agtatttttg cttcacctga gagtgtgact ggtaaagttg gagtaggaac ctgtggaatt 841 gctgataaac ctatgacaca atatcaagat acctctaaat acaatgtcag gcatttgatg 901 cctcaataat cagaaaaact gttggatttc atctctgcag ggctttacat ttaccttttt 961 atccttatat ttttctaaag gtaaattatt tgttagatga gtaagcaaga taccattgtc 1021 gtcattggtt ggcttcagta gaatgaaacg tgaagaaatt gcatttgata actgctattc 1081 atttaacttt tctcattatc agtaccacgg ttccctcaaa gtttgttgaa taaagcaact 1141 tttgtagatg ctgtttcata cagcacttag atgaattatt gatcttccta atatcaggcg 1201 cctacttaac ctatggtgtg tactttttgt aagttgtaac ttgaaatttt cagatgcttt 1261 gaacttgaca catactctag caattcattg gaacaccaag gcaaaaacac caacctgcta 1321 aaagagatct tttcattttt cttattttca gctttaaaac ttagctgtcg ttcagttaag 1381 cttaaagata ggttaatttg taaatggcaa agtttgtttt gaggtttttc ctcaataact 1441 tgtttcccag gcctattagg ccatctctaa aattgatcta gctgttttat ttttatgtac 1501 tcttagtttt atgtaagaaa ccttaggatg agctcccttt tctaaggtgt ttttgttttt 1561 tgtatgtttg cttttttcct gttttttgtt ttttccattt acggcagtgg taccatgttt 1621 tggatgtgtg atgtttatat gggagaacaa aaagctgatg tatagccctg tatacagtgt 1681 agatactatt tttgtaaaaa cacaaggcta aattaatgaa caagaatact gaatatttca 1741 tcattaaaaa tttcttgtat ttcttgtgca ttaatctgac gataatttcc ctgtatatta 1801 tgttcattta gctgtttgta atttttgtta attagatcag gttgtctgca tttgttggtg 1861 taagtgaaca tcatcacagt tatcctgagt tgagtttaag ccaaatacat gcatagaaaa 1921 gggtcttcct attaatggaa gaaggtaatt tttaggatgt gtattatttc agttttgtat 1981 gtttaacttt tattaaataa agtgttttta aaatctccaa aaaaaaaaaa aaa //