LOCUS BC010876 1811 bp mRNA linear HUM 03-OCT-2003
DEFINITION Homo sapiens nei endonuclease VIII-like 1 (E. coli), mRNA (cDNA
clone MGC:9973 IMAGE:3879198), complete cds.
ACCESSION BC010876
VERSION BC010876.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1811)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1811)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (12-JUL-2001) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 14 Row: d Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13375816.
FEATURES Location/Qualifiers
source 1..1811
/db_xref="H-InvDB:HIT000035086"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:9973 IMAGE:3879198"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_68"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1811
/gene="NEIL1"
/gene_synonym="FLJ22402"
/gene_synonym="hFPG1"
/gene_synonym="NEI1"
/db_xref="GeneID:79661"
CDS 412..1584
/gene="NEIL1"
/gene_synonym="FLJ22402"
/gene_synonym="hFPG1"
/gene_synonym="NEI1"
/codon_start=1
/product="NEIL1 protein"
/protein_id="AAH10876.1"
/db_xref="GeneID:79661"
/translation="MPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSA
YRISASARGKELRLILSPLPGAQPQQEPLALVFRFGMSGSFQLVPREELPRHAHLRFY
TAPPGPRLALCFVDIRRFGRWDLGGKWQPGRGPCVLQEYQQFRENVLRNLADKAFDRP
ICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRT
KLQNPDLLELCHSVPKEVVQLGGRGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHG
RTIWFQGDPGPLAPKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKR
TATQRPEGTSLQQDPEAPTVPKKGRRKGRQAASGHCRPRKVKADIPSLEPEGTSAS"
misc_feature 550..1002
/gene="NEIL1"
/gene_synonym="FLJ22402"
/gene_synonym="hFPG1"
/gene_synonym="NEI1"
/note="Fapy_DNA_glyco; Region: Formamidopyrimidine-DNA
glycosylase"
/db_xref="CDD:pfam01149"
BASE COUNT 374 a 534 c 581 g 322 t
ORIGIN
1 cgacgagcgg aacggagtgc gggttcccgg ggagggggcg tgcaggatcg ggttgtgggg
61 ggtgcgctgt agggctaagg agaagatgag ctttgggggg ccctgaggag gaggggagtc
121 aggattaacc gaggacaggg tcgcagcggg ggcatgggga ggacgggccc gagagcgccg
181 ctcctcccca aaactaggat ttggagcctc acgttctccc gcaaaacgag ccctgtgggt
241 gccaggccag gggcggctcc caggtgtgga gggggcaagg tacgggcgtc tgccgtcgct
301 aagtgccccc ttccacttaa ggcacacctt cgcctccgat tccgaaccgc ccggggacag
361 aggcaagtgg caaagcaggg agggcggagg actctgccac cctccctcag gatgcctgag
421 ggccccgagc tgcacctggc cagccagttt gtgaatgagg cctgcagggc gctggtgttc
481 ggcggctgcg tggagaagtc ctctgtcagc cgcaaccctg aggtgccctt tgagagcagt
541 gcctaccgca tctcagcttc agcccgcggc aaggagctgc gcctgatact gagccctctg
601 cctggggccc agccccaaca ggagccactg gccctggtct tccgcttcgg catgtccggc
661 tcttttcagc tggtgccccg cgaggagctg ccacgccatg cccacctgcg cttttacacg
721 gccccgcctg gcccccggct cgccctatgt ttcgtggaca tccgccggtt cggccgctgg
781 gaccttgggg gaaagtggca gccgggccgc gggccctgtg tcttgcagga gtaccagcag
841 ttcagggaga atgtgctacg aaacctagcg gataaggcct ttgaccggcc catctgcgag
901 gccctcctgg accagaggtt cttcaatggc attggcaact atctgcgggc agagatcctg
961 taccggctga agatcccccc ctttgagaag gcccgctcgg tcctggaggc cctgcagcag
1021 cacaggccga gcccggagct gaccctgagc cagaagataa ggaccaagct gcagaatcca
1081 gacctgctgg agctatgtca ctcagtgccc aaggaagtgg tccagttggg gggcaggggc
1141 tacgggtcag agagcgggga ggaggacttt gctgcctttc gagcctggct gcgctgctat
1201 ggcatgccag gcatgagctc cctgcaggac cggcatggcc gtaccatctg gttccagggg
1261 gatcctggac cgttggcacc caaagggcgc aagtcccgca aaaagaaatc caaggccaca
1321 cagctgagtc ctgaggacag agtggaggac gctttgcctc caagcaaggc cccttccagg
1381 acacgaaggg caaagagaga ccttcctaag aggactgcaa cccagcggcc tgaggggacc
1441 agcctccagc aggacccaga agctcccaca gtgcccaaga aggggaggag gaaggggcga
1501 caggcagcct ctggccactg cagaccccgg aaggtcaagg ctgacatccc atccttggaa
1561 ccagagggga cctcagcctc ttagcaggag gctctccttg cttgcactca ccctttctta
1621 ttgtcttgcc ctgcatctgg gggtctgaat ttttgggagc aggcaatatc tgaaggtgca
1681 aacaggccct acggctgttc cctgcacaac tctcatggtt ttaattgtac cccatcttcc
1741 acatctttaa agctcatgtg aaaaatgctg catttttaat aaactgatac atttgaaaaa
1801 aaaaaaaaaa a
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